Gene SO_3779 details

Gene Information

• Locus tag: SO_3779
• Symbol: cydC
• ID: 1171426
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 3929325
• End bp: 3931076
• Gene Length: 1752 bp
• Protein Length: 583 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637345552
• Product: cysteine/glutathione ABC transporter membrane/ATP-binding component
• Protein accession: NP_719316
• Protein GI: 24375273
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4987] ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components
• TIGRFAM ID: [TIGR02868] thiol reductant ABC exporter, CydC subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGTGT TAATTCCCTT TATTCGACTG TTCTCGCACC AATGGGTGAT GATGGCCGTG 
GGGTTAATCC TCACGCTCAC CACGCTTATG GCGGGGATTG GGCTGTTGTC ACTTTCCGGC 
TGGTTTTTAT CGGCCACGGC AGTGGCAGGT TTGACCCTCG TTAGCGCCCA AGTCTTCAAC 
TTTTTTACGC CCGCGGGTGG GGTGCGATTT TTATCTATTG CCCGTACAGC CAGTCGTTAC 
GGTGAGCGCC TAGCAACCCA TGAGGCGACC TTTAAATTAT TAACTGAACT GCGGGTATGG 
GCATGGCGAA AACTCTTTCC TTTAAGTGCT AAAAATCTGC AAGGGCTGCG CCGCGCCGAT 
ATGCTCAATC GTCTCGTGGC GGATATAGAT ACGCTCGACC ATCTGTATTT AAGACTACTG 
ACGCCGATGG CGGCATCTTT ACTGATGACA GGGCTTTTGT ATCTCTTTCT CGCTTGGTTT 
GATGCCAAGC TCGCCTTAAG TTTGTGCTTA TTTTTGATCC TGGTTTGGTT GCTGTTACCA 
CTGCTGTTTT ATCGTCTCGG GCATGCGCCT AGCCGCAATA TGCTTGAGAC TAAACGCCAA 
TATCGAGTGC AGTTACTCGA TATATTACAA GGCCAAGCGG AGCTGAGTTT ATTTGGCGCC 
AATGCTAGAT ATAGGCAAAA ACTTGATGAT GCCGAGCAAG CGTTATTTGC CAGCCAAACG 
GCCATGGCCA ATATTACCGC CTTAAGCCAA GCGATGCTGA TTATCGCAAC GGGCTCTGCG 
CTTATCATGA TGTTGTTTTT AGCCGCCAAT GGCGTTGGAG ATGCCGTGCC TCCCGGCCCG 
ATGTTCGCTT TGATGGTATT TGCCACTATG GCCTGTGTGG AAATGATGAT GCCGATTGCG 
GGCGCCTTCC AGCATTTATC CGGTTGTGTG CTGGCGGCGA TGCGTATTAA CGAAATCACT 
GAGCAAGAAA GTGATATTCG TTTTAGTACA GATACAGATC TTAAGGCGAT CTCAGGCGGA 
CTGCAGATCC ACGATATCCA CTTTGGCTAT CTCGAAAACC AGCACGTGCT GCAGGGCTTA 
TCCCTCGAGA TTAAACCGGG CCAAAAGGTG GCGCTATTAG GTTCCACAGG CTGTGGTAAA 
TCCAGTTTAT TGTCCTTAAT CACCCGAGAT TGGCAGGCGC AAAGCGGACA GATTTACCTT 
GATGGTCATC TACTGAGTGA CTACAGTGAA TGCGCCTTAA GATCGGCGAT GACAGTAGTG 
AGCCAACGTA TTTATCTGTA TGCGGGCACC CTGCGGGAAA ATCTCGCCAT TGCTTTGCCC 
GTGCCTGAAG GCCAAAAACG CACCGCCAAT GATGCGCGTT TTATCGACGT CTTACAGCAA 
GTTGGCTTAG GTGATTTACT AAAAGGCGAC AAACCGTTAG ATATGTGGAT TGGCGAAGGC 
GGACGGCAGT TATCGGGCGG CGAGCAGCGC CGTATCGGGG TGGCAAGAGC ACTGCTGAGG 
GATGCGCCAC TACTGTTGTT AGATGAACCT ACTGAAGGCT TAGATAAACG TACCGAGCGT 
GAAATTTTAA GCTTATTATT TGAATTTGCT AAAGATAAAA CTCTACTCAT GATTAGCCAC 
CGTTTAACTG CGATGGCAAA GATGGATCAA ATCCACCTTA TGGCTGAGGG CAAAATCATG 
GCATCGGGAA ATCATCAAAG TCTGCTCAAG GAGTGCGCCG CGTATCAGGC GCTCTATCGT 
CGGTTAGGTT GA 

 

Protein sequence

MKVLIPFIRL FSHQWVMMAV GLILTLTTLM AGIGLLSLSG WFLSATAVAG LTLVSAQVFN 
FFTPAGGVRF LSIARTASRY GERLATHEAT FKLLTELRVW AWRKLFPLSA KNLQGLRRAD 
MLNRLVADID TLDHLYLRLL TPMAASLLMT GLLYLFLAWF DAKLALSLCL FLILVWLLLP 
LLFYRLGHAP SRNMLETKRQ YRVQLLDILQ GQAELSLFGA NARYRQKLDD AEQALFASQT 
AMANITALSQ AMLIIATGSA LIMMLFLAAN GVGDAVPPGP MFALMVFATM ACVEMMMPIA 
GAFQHLSGCV LAAMRINEIT EQESDIRFST DTDLKAISGG LQIHDIHFGY LENQHVLQGL 
SLEIKPGQKV ALLGSTGCGK SSLLSLITRD WQAQSGQIYL DGHLLSDYSE CALRSAMTVV 
SQRIYLYAGT LRENLAIALP VPEGQKRTAN DARFIDVLQQ VGLGDLLKGD KPLDMWIGEG 
GRQLSGGEQR RIGVARALLR DAPLLLLDEP TEGLDKRTER EILSLLFEFA KDKTLLMISH 
RLTAMAKMDQ IHLMAEGKIM ASGNHQSLLK ECAAYQALYR RLG