Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3748 |
Symbol | |
ID | 1171397 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 3895207 |
End bp | 3896121 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637345524 |
Product | LysM domain-containing protein |
Protein accession | NP_719287 |
Protein GI | 24375244 |
COG category | [S] Function unknown |
COG ID | [COG1376] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTATGC TCCGCACCAC AGCTTTATTA TTGACTTTGG TTTTCCCAAG TCTCTCCGCT TTAGCAACGG AATACCCTTT ACCGTCTCCG AAGAGTCGGT TAGTTGGCGA GAACCTGTAT TACACAGTGC CAGAGGGTAA ACATACCCTC GAAGATATTG CTGCTCAGTT CCAACTCGGT CTAAGCAACT TGCTGGAAGC CAATCCAGGC GTCGATCCGT TTCTACCTAA GCCTGGCAGT AAGCTATTAA TTCCAAAACA ATTAATCCTA CCAAATGCAC CTCGCGAAGG CATAGTGATC AACGTTGCCG AAATGCGTCT GTATTACTAT CCAAAGGGAA AAAAGACGGT TGAAGTGCTA CCCATTGGTA TTGGCCAAAT CGGTAAAGAT ACGCCAGAAA ACTGGGTAAC CAGCGTTCAA CGTAAGCGTG CAAACCCCAC TTGGACTCCT ACACCACGTA TTCGCAAAGA ATATGCGGCA AGGGGAGAAA TTCTACCTGC GGTATGGCCA GCAGGTCCTG ATAACCCAAT GGGACTCTAT GCACTCTACA TTGGTAACTT GTATGCCATC CATGGCACCA ATGCCAGCTT CGGTATTGGT TTACGAGTAA GCCAAGGCTG TGTCCGTTTA CGTCACGATG ATATTGAACA CTTGTTCAAA ACTGTGCCTA TAGGGACCCG AGTACAATTT GTAAACCAAC CGATTAAGGC GACCGAAGAG CCAGATGGCA AGCGTTACCT AGCCGTACAT CAGCCGCTAT CACGCACCAT TGCTGAGTTT GAGTCTAATG AGCCAGTTGC ACTTTCTTTA CCGAAAGATA TCGCAAAGTT TATTGCAAAA GCTGACACCG ACTCCAGCAT GATTAAAAAG CTACTGGATG AGCGCACTGG CGTACCAGCG ATTATTAATC AGTAA
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Protein sequence | MSMLRTTALL LTLVFPSLSA LATEYPLPSP KSRLVGENLY YTVPEGKHTL EDIAAQFQLG LSNLLEANPG VDPFLPKPGS KLLIPKQLIL PNAPREGIVI NVAEMRLYYY PKGKKTVEVL PIGIGQIGKD TPENWVTSVQ RKRANPTWTP TPRIRKEYAA RGEILPAVWP AGPDNPMGLY ALYIGNLYAI HGTNASFGIG LRVSQGCVRL RHDDIEHLFK TVPIGTRVQF VNQPIKATEE PDGKRYLAVH QPLSRTIAEF ESNEPVALSL PKDIAKFIAK ADTDSSMIKK LLDERTGVPA IINQ
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