| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3700 |
|---|
| Symbol | |
|---|
| ID | 1171357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 3850422 |
|---|
| End bp | 3851807 |
|---|
| Gene Length | 1386 bp |
|---|
| Protein Length | 461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637345485 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | NP_719240 |
|---|
| Protein GI | 24375197 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTATC GCTTTGCTCA ATGCTTGTCA TGCATACTGC TCATACTGTG CACGCTCCTA
TCGAGTTCAA TCGGCGTTGC AGCCGAAAGA CAAAAGTTGA TCATTGCCAA CTCAAAAGCA
TGGAAACCCT ATTCCTACAT CGACGAGCAA GGCAAGCCAT CAGGCATATT AATCGACCTA
TGGATCGCTT ACGGCCAAGC GAATAATGTT GATATCGAAT TTCAGCTTAT GGATTGGAAT
GACTCTCTGC TGGCTGTTAA GTCTGGAAAA GCGGATATCC ATGCAGGGTT AATTCGCTCA
CCCGTAAGGT TAGAATATCT TGATTTTGAT GAGCCTCTTC TAGAAATCGA CACACAGCTT
TACATGCACC AAACACTGCT TGGCGACAAA TTACAAGATC TACTCGCAGG ACGATTGGAT
ACTGCTGTCG GGGTGGTTAA GGGCGGATTT GAACAAGAAT TTGCACAACG GCATTTTCCT
CAGTTGTCTT TGATCGAGTA CATTGATAAT GACTTAATGA TGCAAGCCGC AAAACGCGGT
GAACTCGATG CCTTTATCGC AGATGCACAA GTCGGCAACT TTTATATTCT GGTAGCTAAT
GGCGCGAAAG AGTTTATGCC AGCACAATTT CTCTATTCAG AGCCTCTTCG TCCCGCCGTT
CGAAAAGGCA ATCAAGCATT ACTAAGTCAA ATCAATCAAG GTTTTAAAAA GCTTAACACG
CAAGAAAAGA ATCGAATTCT AAGTCGTTGG ATCCATATTG AAACCGTTTA TCCTCGCTAT
CTTATTCCTG CTTTGGCTGC TGGAATATTG AGTGCAGGAT TATTTTATAC CCTGCAATTA
CGTCGCACGG TAAGAATACG CACACGTCAG CTTGAAGATG CAAACCATAA ATTGACCCTG
CTCGCCCAGA CAGATAGCTT AACGGGCATT CATAATCGCC ATTACTTTTT TAACCAGTTA
AGTGACACGC AAGATCTGGC TAGCAGCCTA ACGTTAATCG TATTTGATAT TGATGATTTT
AAGTCGATTA ATGACACCTA TGGACACAGT GCAGGGGATA ATGCAATTTG CCTTATTACC
ACTTGTGTGC GTGAAGTCCT TGAGCCTGAG ATGCAGTTTG CCAGAATTGG GGGTGAAGAA
TTTGCCATTT TAGCGCGAGA CAAATCGGCA CAAGCATCAC AGCAACTGGC AAAACGTATA
TGTCAGCAAA TAGCACAAAA AAAACTCCCA TTAGCTTCAA ATACGCTGAT TTCATTAACG
GTAAGCCTTG GATGTGCCTT TTATCCTACG CCAGACAATC CATTCACTCT TAATGCCGCA
GATAGTTTGA TGTATGAAGC AAAGCGTAAA GGGAAGAACC AAGCCGTTTT CAGAGAATTC
TGCTAA
|
|---|
| Protein sequence | MNYRFAQCLS CILLILCTLL SSSIGVAAER QKLIIANSKA WKPYSYIDEQ GKPSGILIDL
WIAYGQANNV DIEFQLMDWN DSLLAVKSGK ADIHAGLIRS PVRLEYLDFD EPLLEIDTQL
YMHQTLLGDK LQDLLAGRLD TAVGVVKGGF EQEFAQRHFP QLSLIEYIDN DLMMQAAKRG
ELDAFIADAQ VGNFYILVAN GAKEFMPAQF LYSEPLRPAV RKGNQALLSQ INQGFKKLNT
QEKNRILSRW IHIETVYPRY LIPALAAGIL SAGLFYTLQL RRTVRIRTRQ LEDANHKLTL
LAQTDSLTGI HNRHYFFNQL SDTQDLASSL TLIVFDIDDF KSINDTYGHS AGDNAICLIT
TCVREVLEPE MQFARIGGEE FAILARDKSA QASQQLAKRI CQQIAQKKLP LASNTLISLT
VSLGCAFYPT PDNPFTLNAA DSLMYEAKRK GKNQAVFREF C
|
|---|
| |