| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3660 |
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| Symbol | |
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| ID | 1171318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 3812853 |
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| End bp | 3814319 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637345448 |
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| Product | sigma-54 dependent transcriptional regulator/sensory box protein |
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| Protein accession | NP_719202 |
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| Protein GI | 24375159 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAACAA AGATTCCCGC CACAATGCCC TTAGATAAGC ATTTTCTGCC AGAAAATCAG
CTACTGCTTA ATGCCGTAGG TGAAGGCATT TATGGTTTTG ATTTAAATGG TAATGCTGTA
TTTATCAACC CTGCAGCTGA GCGTATGACG GGCTGGAAGA ATGAAGAGTT ACTCGGCAAG
AATATCCATA ATTGCCATCA CCATAGTCAC GCGGACGGTA GTCATTATCC CCAAGAAGAC
TGCCCAATTT ACAATACCTT AAAAGATGGA ATTGCCCGCG AAATTACCCA TGATGTATTT
TGGCGTAAGG ATGGCAGCAG TTTTCCGGTG TATTACAGCT CAACTCCCGT TTACAGGGAC
AATAAGCTTA TCGGTGTAGT CGCGATATTT CGTGACATTA GTATTCAAAA GCAAACCGAG
CAATCGCTTC GCCATGCGTT AGCACAGGTA CAGGCGCTTT CGGAACAGCT GGCGAGCGAG
AATCACTATC TCCAAGCCGA GTTAGCCGAC AAGACTGGTG ATGTGGATAT TTCAGGCGGT
AGTGCGGTGA TCCGTCATAT GATCCAACAA CTGCATATGG TGGCCAATAC CGACAGTACA
GTGTTGATTT GTGGCGAAAA TGGTACAGGC AAAGAACTAG TTGCCCGCAA CTTACATCAA
CTGAGCCGTC GTAAAGATAA GCCGATGATC AGCGTTAACT GCGCGGCATT TTCAGCATCT
CTATTAGAAA GTGAGCTCTT TGGCCATGAA AAAGGGGCAT TCACAGGCGC GACTTCGCAA
CGCAAGGGCC GCTTCGAACT CGCCCATCAA GGCACGCTGT TTCTCGATGA GGTGGCAGAG
TTAAGTTTAG AGGCACAATC CAAGTTACTG CGAGTGATCC AGGAGCAATC TTTTGAACGC
CTTGGTGGCA GTGAAACCAT TAAGGTCGAT ATTCGCTTAG TCGCCGCCAG CCACCATGAC
TTACTCAAGC GAGTGGAGCA AGGGTTATTT AGAATGGATC TGTATTACCG CTTGAATGTG
TTCCCAATTC AAGTACCACC TCTGCGAGCA AGACTTGGGG ATATGCCCGA ATTAGTCAGC
CATATTCTGC ACACACTTAA CCGCAAGCTA GGTAAAAAAA TCCGCGGCGT AAGTCAAAAA
GGGCTTAAAA AATTAATGAC CTACAGTTGG CCTGGCAATG TGCGCGAATT GCAAAATATT
CTCGAACGGG AGGCCATTTT ATCTCAAACG GATATTTTAC ATATCCATGC CATGCCCACG
CATCATCTGC AGACTCAAAC CGCGGCTTCA CCATTACAAA CCCTGGCCGA GGCGGAAGCG
CAACATATAG AGCAAACATT AAAGCAGCTC AACTGGCGTA TTTCGGGCGC GAACGGCGCG
GCCAATGTAC TCGGCGTCCC GCCAAGTACA CTCAGATCGC GGATGAAGAA GCTAGGAATT
ACACGTCAAA TCACTAGGGC GTGTTGA
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| Protein sequence | MATKIPATMP LDKHFLPENQ LLLNAVGEGI YGFDLNGNAV FINPAAERMT GWKNEELLGK
NIHNCHHHSH ADGSHYPQED CPIYNTLKDG IAREITHDVF WRKDGSSFPV YYSSTPVYRD
NKLIGVVAIF RDISIQKQTE QSLRHALAQV QALSEQLASE NHYLQAELAD KTGDVDISGG
SAVIRHMIQQ LHMVANTDST VLICGENGTG KELVARNLHQ LSRRKDKPMI SVNCAAFSAS
LLESELFGHE KGAFTGATSQ RKGRFELAHQ GTLFLDEVAE LSLEAQSKLL RVIQEQSFER
LGGSETIKVD IRLVAASHHD LLKRVEQGLF RMDLYYRLNV FPIQVPPLRA RLGDMPELVS
HILHTLNRKL GKKIRGVSQK GLKKLMTYSW PGNVRELQNI LEREAILSQT DILHIHAMPT
HHLQTQTAAS PLQTLAEAEA QHIEQTLKQL NWRISGANGA ANVLGVPPST LRSRMKKLGI
TRQITRAC
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