Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3577 |
Symbol | clpB |
ID | 1171246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3742470 |
End bp | 3745043 |
Gene Length | 2574 bp |
Protein Length | 857 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637345375 |
Product | clpB protein |
Protein accession | NP_719122 |
Protein GI | 24375079 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGACTCG ATCGTATGAC CAATAAATTT CAGCTTGCCA TCTCAGATGC CCAGTCGTTA GCTCTTGGGC GTGATCATCA GTTTATCGAA CCGCTACATT TGATGATGGC GCTGCTCAAC CAGGATTCTG GTTCTATCCA TCCTTTATTA ACCCAAGCTG GTATTCGGGT GAGTGCATTG CGTTCGCTTT TGAGCCAAGA GCTTGAGCGT CTTCCCCAAG TTGAAGGCAC TGGCGGCGAT GTACAGTTAT CCCAAGGGTT AATTCGTTTA TTAAACCTTT GCGATAAATT GGCGCAAAAG CGTAAAGACA AATATATCTC CAGCGAATTG TTCGTTCTCG CGGCGCTTGA GGGCTGCGAT GCACTAGCGC AATGCCTCAA AAAATCCGGC GCGACCAAAG AGCTGATGGA ACAAACCATT GAGCAAGTGC GTGGTGGGCA AAAAGTGGAT GATCCCAATG CGGAAGATCA ACGCCAAGCG CTGAAAAAGT TTACCGTCGA TCTTACTGAA CGTGCTGAGC AGGGCAAACT CGATCCTGTG ATTGGCCGTG ATGATGAAAT TCGTCGCACG ATTCAAGTCT TGCAACGTCG AACTAAAAAT AACCCTGTGC TTATTGGTGA GCCTGGGGTG GGTAAAACGG CCATTGTCGA AGGGCTTGCT CAGCGGATTG TGAACGGTGA AGTACCTGAA GGTATTAAAA ATAAACGTGT TTTATCCTTA GATATGGGGG CATTAATTGC GGGCGCTAAA TACCGGGGAG AGTTCGAGGA GCGTTTAAAA GCCGTGCTTA ACGAGCTGGC GCAGGAAGAA GGCCAAGTGA TCCTCTTTAT CGACGAGCTA CACACTATGG TGGGCGCGGG CAAGGGCGAT GGCGCAATGG ATGCGGGCAA TATGTTAAAA CCTGCTTTGG CTCGTGGCGA TCTCCACTGC GTAGGGGCTA CTACTCTCGA CGAGTATCGC CAATATATTG AAAAAGATGC CGCCCTTGAG CGTCGTTTCC AAAAAGTATT AGTGGATGAG CCAAGCGTTG AAGACACCAT CGCGATTTTG CGTGGCTTGA AAGAGCGTTA TGAGCTGCAT CACCATGTGG AAATTACCGA TCCAGCGATT GTGGCGGCGG CGACGATGTC GCACCGTTAT GTGTCGGATC GTAAATTACC TGATAAAGCC ATCGATTTAA TTGACGAAGC GGCATCGAGC ATCCGTATGC AGATGGATTC CAAGCCTGAA TCCCTCGACA GGCTCGAACG TCGTGCTATC CAGCTCAAAC TGGAGGAGCA AGCGTTAGCC AAAGAAAATG ATGAGGCGAG TCGTCGAAGG CTAGATCATT TGCAAGAGGA ATTGCGTGAC GTTGAAGCTA AGGCTTCTGA GCTGAGCGAA ATCTGGCGTA CCGAAAAGGC TGCCCTTGCT GGTACTCAGC ATATTAAAGC CGATTTGGAA CAAGCGCGGC TGGACTTAGA AGTCGCGCGC CGCGCAGGTG ATTTAACTCG TATGTCTGAA TTGCAATATG GCCGCATTCC AGAGCTTGAA AAGCAGCTGG ATTTAGCATC GCAAGCTGAA ATGCAGGATA TGACCCTGCT GCGTAATAAA GTCACCGACT TAGAAATTGC CGAAGTATTG TCTAAGGCAA CGGGTATTCC TGTGTCTAAG ATGCTCGAAG GCGAGCGTGA AAAACTGTTG CAGATGGAAG TGGCATTACA TGAGCGTGTG ATTGGCCAAA ATGAAGCTGT AGATGCGGTC GCCAATGCGA TTCGTCGCAG CCGAGCTGGG CTTGCCGATC CAAATCGCCC GATTGGTTCG TTCCTGTTTT TAGGACCAAC TGGTGTGGGT AAAACTGAGC TGTGTAAGTC GTTAGCTAGA TTCTTATTTG ATAGTGAATC AGCCTTAGTG CGCATCGACA TGTCCGAGTT TATGGAAAAA CATGCAGTTT CACGTTTGGT TGGTGCTCCT CCTGGATATG TTGGTTATGA AGAGGGCGGT TACTTAACTG AAGCAGTTCG TCGTAAGCCT TATTCAGTGA TTTTGCTCGA TGAGGTGGAA AAGGCGCACC CTGACGTGTT CAACATTTTG CTGCAAGTAT TGGATGATGG CCGCTTAACC GATGGTCAAG GTCGCACTGT CGACTTTAGA AATACGGTGA TCATCATGAC CTCGAACTTA GGTTCCGACA TTATCCAAGA AGGATTCGGC CATTTAAGTT ACAGCGAAAT GAAGAGCGCG GTGATGAATG TGGTGACCCA TAGCTTTAGA CCCGAGTTCT TAAACCGGAT CGATGAGTCT GTGGTATTCC ATCCCTTGGA TGCAGAAAAT ATCAAGCATA TTGCTTCTAT CCAAATTGCT TCATTGCGTA AGCGTTTGGC AGAGAAAGAC TATACCCTGG AGATCACCGA CGAGGCATTA TCGTTGATCG CAGAAATTGG TTTCGACCCT GTCTATGGTG CAAGACCACT AAAACGAGCC TTGCAACAAG AGATGGAAAA TCCGCTAGCG CAAAAACTAC TGCGTGGTGA TTTGCTACCC GGCAAACCTA TCAAGGTCAG CTGTGTGGAT GGTGAACTGG TATTTGAGCA ATAA
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Protein sequence | MRLDRMTNKF QLAISDAQSL ALGRDHQFIE PLHLMMALLN QDSGSIHPLL TQAGIRVSAL RSLLSQELER LPQVEGTGGD VQLSQGLIRL LNLCDKLAQK RKDKYISSEL FVLAALEGCD ALAQCLKKSG ATKELMEQTI EQVRGGQKVD DPNAEDQRQA LKKFTVDLTE RAEQGKLDPV IGRDDEIRRT IQVLQRRTKN NPVLIGEPGV GKTAIVEGLA QRIVNGEVPE GIKNKRVLSL DMGALIAGAK YRGEFEERLK AVLNELAQEE GQVILFIDEL HTMVGAGKGD GAMDAGNMLK PALARGDLHC VGATTLDEYR QYIEKDAALE RRFQKVLVDE PSVEDTIAIL RGLKERYELH HHVEITDPAI VAAATMSHRY VSDRKLPDKA IDLIDEAASS IRMQMDSKPE SLDRLERRAI QLKLEEQALA KENDEASRRR LDHLQEELRD VEAKASELSE IWRTEKAALA GTQHIKADLE QARLDLEVAR RAGDLTRMSE LQYGRIPELE KQLDLASQAE MQDMTLLRNK VTDLEIAEVL SKATGIPVSK MLEGEREKLL QMEVALHERV IGQNEAVDAV ANAIRRSRAG LADPNRPIGS FLFLGPTGVG KTELCKSLAR FLFDSESALV RIDMSEFMEK HAVSRLVGAP PGYVGYEEGG YLTEAVRRKP YSVILLDEVE KAHPDVFNIL LQVLDDGRLT DGQGRTVDFR NTVIIMTSNL GSDIIQEGFG HLSYSEMKSA VMNVVTHSFR PEFLNRIDES VVFHPLDAEN IKHIASIQIA SLRKRLAEKD YTLEITDEAL SLIAEIGFDP VYGARPLKRA LQQEMENPLA QKLLRGDLLP GKPIKVSCVD GELVFEQ
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