Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3542 |
Symbol | |
ID | 1171213 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 3696497 |
End bp | 3698863 |
Gene Length | 2367 bp |
Protein Length | 788 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637345341 |
Product | putative phosphoketolase |
Protein accession | NP_719089 |
Protein GI | 24375046 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3957] Phosphoketolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGAATA CACATGAAAT AAATGCTCTT AAAAAATACG TAAGAGCTAC TAACTTCCTC GCCACCTCCC AGATTTACTT AAAGCAAAAC GTACTACACA AGCGCCCGCT TGCGCATTCG GACATAAAGC CTCGCTTGCT CGGTCACTGG GGAACTTGCC CTGGTATCAA CTTTGTCTAC GCCAACATTA ACCGACTTAT AGTAAAACAT AATCGTCCTT TTATTTATTT AGTCGGTCCA GGTCATGGCT TCCCTGCAGT ACAAGCAAAC TTATTCATTG AAGGCTCACT AAGCCACTTC TACCCAGAAA CCATTCCTTA TAATGAAACT GGTATTGAGG ATATCTGTAA GAAATTCTCA GCAGCTTACG GTTATCCTTC GCATGCTAAC CCTGAGGCTC CAGGACAAAT TCTTGAAGGT GGTGAATTAG GTTATTCATT ATCCGTTGGC TGGGGGGCAG TGCTTGATAA CCCTGATCTT ATCGCGACCG TATTAGTCGG TGACGGTGAA TCTGAAACAG GTCCATTAGC CGCCTCTTGG TACGCAAACC GTTTAGTTTC ACCCGCAACG AACGGTGCTG TATTACCTAT CGTCCATATT AACGGCTATA AAATCTCAGG GCCAACGCGT ATGGGACGTA TGAGCCATGA AGAATTAGAT CTTGAATTCC GTGGCCTTGG CTATCACCCA ATTATTGTGG ACAGCGAAGC CGAAGAAGAT GTTTATATCC AAATGGCAAC CGCCATGGAT ACTGCTTATA GCATGATCAA CGATATTCAA ACCCGTGCCC GCAAAGGTGA AGATATTGTT AAACCTCGCT GGCCAGTGAT TTTAATGCGT ACAGCTAAAG GCTGGACGGG TGTAAGCGAA TATAACGGGC AAAAACTCGA AGGAAACTGC GAATCACACC AAGTTATCGT GAACAAATGT GCGACTGACA AAGGTCATCT CGCTGCCCTT GATAACTGGT TAGCCAGTTA TCGGTTCCAA GAGCTGTACC AAATCAATGC CCAAGGTGAA TTGATTTTTG ATGCTGATAT TTGCTCATTG ATCCCACCAA AACACTTAGC TTGTGGTCGC CAACATCTTA CCTATGGTGG CGAAGTTGTA AGAGCGTTAT CTAATCCTGA TTTAGAAAAA CTCAGCTACG GCCCAGAAGT GCCACGTGGA CAACGCGGTT ACTCTATGCT GAAGATGGGA CAATGGATGC GTGATGCGTT CAAACTCAAC CGTGACCAGC GTAATTTACG TATCTTTAGT CCAGACGAAA CCTATTCAAA TCAACTTCAG GCCGTATTTG AAGAAACGGA CCGAGCATGG CAATGGCCAA TCGAGAGCTG GGACGAAGAT ATGTCTCGTG ATGGCCGTGT AATAGAGCTG CTATCTGAAA ACTTGCTTTT CGGTATGTTG CACGGCTACA CAGTCACAGG CCGCCACGGC ATGTTCCCAA CCTACGAGTC ATTCTCACAG GTGGTTTCAT CAATGGCAGA TCAATACTGT AAATATGTTT ATGCAAGCCA AGGCGTGCAT TTCCGTAAAC CTTTGCCTGC GTGTAACGTG GTTCTATCTT CATTATTAGA GCGTCAAGAT CACAATGGCT ACTCACACCA AAATCCGTCT TTCTTAGGCG CGATGTTAGA GAAGCACCCA AAAATTATCT CTGCCTATTT ACCTGCTGAT GCTAACAGTA CTTTAGTTTA CACTGAACGT GCATTTGCGG ATCGTGACAA GCTGAACATC CTCGTAGCAG GTAAAAAAGA ACTACCACAA TGGTTAAGCT TAGAAGAAGC ACGTAAACAA GCAAAAGACG GTGTCATGGT GTGGGATTTT GCTTCAGATG AAAATCCAGA TATCGTCCTT GCAGGTTGCG GTGACTATGT AACACAAGAA TGTATGGCAT CATTAGTGAT CATTCGTGAA CTGCTTCCTC GAGTAAGAAT TCGTTTTGTT AGCGTTACAG AATTAAGTAG CGATGGCTTA GGCAGCCGTA AATTTAAAGA AAAACCATGG ATGATGGATG AAATATTTAC CCAAGATAAA GGAGTTGTAT TTAACTATCA CGGTTATCCA AATACAATCA AAAAGTTAAT TTTTGATTAC AAAGGAAGCC GTCGTTTCAG AATTAAAGGT TACGAGGAAG AAGGTTCAAC GACTACTCCA TTTGATATGG GTGTTCGCAA CGGAACTTCT CGCTATCACC TTGTGATTGA TATGGCTTAC AAACTGTTCC AACAGGGCGT TATTGATGAA ACTAAACATG TTTCAATTAC AACCGATATG CTGCAAAGAC TCGTTGATCA CCGCAACTAT ATAAAAGCAC ATGGAGTAGA CCCTGTTGAA ATTGAAAATT GGGTTTGGAC ACGCTAA
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Protein sequence | MTNTHEINAL KKYVRATNFL ATSQIYLKQN VLHKRPLAHS DIKPRLLGHW GTCPGINFVY ANINRLIVKH NRPFIYLVGP GHGFPAVQAN LFIEGSLSHF YPETIPYNET GIEDICKKFS AAYGYPSHAN PEAPGQILEG GELGYSLSVG WGAVLDNPDL IATVLVGDGE SETGPLAASW YANRLVSPAT NGAVLPIVHI NGYKISGPTR MGRMSHEELD LEFRGLGYHP IIVDSEAEED VYIQMATAMD TAYSMINDIQ TRARKGEDIV KPRWPVILMR TAKGWTGVSE YNGQKLEGNC ESHQVIVNKC ATDKGHLAAL DNWLASYRFQ ELYQINAQGE LIFDADICSL IPPKHLACGR QHLTYGGEVV RALSNPDLEK LSYGPEVPRG QRGYSMLKMG QWMRDAFKLN RDQRNLRIFS PDETYSNQLQ AVFEETDRAW QWPIESWDED MSRDGRVIEL LSENLLFGML HGYTVTGRHG MFPTYESFSQ VVSSMADQYC KYVYASQGVH FRKPLPACNV VLSSLLERQD HNGYSHQNPS FLGAMLEKHP KIISAYLPAD ANSTLVYTER AFADRDKLNI LVAGKKELPQ WLSLEEARKQ AKDGVMVWDF ASDENPDIVL AGCGDYVTQE CMASLVIIRE LLPRVRIRFV SVTELSSDGL GSRKFKEKPW MMDEIFTQDK GVVFNYHGYP NTIKKLIFDY KGSRRFRIKG YEEEGSTTTP FDMGVRNGTS RYHLVIDMAY KLFQQGVIDE TKHVSITTDM LQRLVDHRNY IKAHGVDPVE IENWVWTR
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