Gene SO_3529 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3529 
SymbolispH 
ID1171202 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp3683909 
End bp3684865 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content46% 
IMG OID637345330 
Product4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
Protein accessionNP_719076 
Protein GI24375033 
COG category[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTTG ATCCTACCAG CCCAAGTTTA AATATCATGC TGGCAAATCC TCGCGGCTTT 
TGTGCTGGTG TGGATCGTGC TATCAGCATT GTTGAACGCG CGCTCGAGTT ATTTTCACCC 
CCTATTTATG TTCGCCATGA AGTCGTACAT AACCGCTATG TGGTGCAAAA TCTTAAAGAC 
CGCGGTGCTG TTTTTGTCGA AGAGTTAGAT CAAGTGCCTG ATAATAATAT TGTTATCTTT 
AGTGCGCATG GTGTTTCTCA GGCCGTACGT GCTGAGGCAA AAGCCCGTGG TTTACGGGTG 
TTTGATGCCA CTTGTCCGTT AGTGACTAAA GTGCATTTAC AGGTCACTCG CGCAAGTCGC 
AAGGGAATTG AATGTATTTT AATTGGCCAC GCTGGGCACC CTGAAGTCGA AGGCACTATG 
GGGCAATATG ATAATCCTAA TGGTGGAGTT TATCTGATTG AATCCCCTGC GGATGTCGAA 
ACCTTAGAAG TTCGTGATCC GAATAATCTG TGCTTTGTAA CCCAAACTAC GCTCTCGGTA 
GATGACACTC TCGACATTAT CTCAGCGCTG CTAAAGCGTT TTCCTTCTAT TGAAGGCCCT 
CGCAAGGATG ATATTTGTTA CGCGACCCAA AACCGCCAGG ATGCGGTGCG TAATCTTTCA 
GCCGATGTGG ATCTGTTAAT CGTAGTGGGC TCGAAAAACA GCTCTAATTC TAATCGGTTA 
CGTGAATTAG CCTTAAAAAC GGGCACCCAG TCTTATCTCG TTGATACTGC TGATGATATT 
GATTCATCTT GGTTTGAAAA TATTACAAAA GTCGCAGTGA CGGCTGGCGC GTCTGCACCA 
GAAGTTCTCG TACAGCAAGT GGTTCAAGCC ATCGCGAAAT TAGCGCCGAG TGTGGTGACT 
GAAGTCGAAG GACGTAAAGA AGATACTGTC TTTGCAGTAC CCGCTGAATT ACGTTAA
 
Protein sequence
MKFDPTSPSL NIMLANPRGF CAGVDRAISI VERALELFSP PIYVRHEVVH NRYVVQNLKD 
RGAVFVEELD QVPDNNIVIF SAHGVSQAVR AEAKARGLRV FDATCPLVTK VHLQVTRASR 
KGIECILIGH AGHPEVEGTM GQYDNPNGGV YLIESPADVE TLEVRDPNNL CFVTQTTLSV 
DDTLDIISAL LKRFPSIEGP RKDDICYATQ NRQDAVRNLS ADVDLLIVVG SKNSSNSNRL 
RELALKTGTQ SYLVDTADDI DSSWFENITK VAVTAGASAP EVLVQQVVQA IAKLAPSVVT 
EVEGRKEDTV FAVPAELR