| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3525 |
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| Symbol | |
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| ID | 1171198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3678173 |
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| End bp | 3681679 |
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| Gene Length | 3507 bp |
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| Protein Length | 1168 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637345326 |
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| Product | type IV pilin biogenesis protein, putative |
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| Protein accession | NP_719072 |
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| Protein GI | 24375029 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAATCA AAAAACTCAC TTTTTGTACA TTGCTTGCAT TGGCTTCAAC GTCAATCTCA
TCGTTTGGCG ATGATACAGA ACTGTATGTA AAAGAATCGT CGACACGCAC GGGGGCTAGG
CCTAAAGTCT TGGTTATTTT TGATAACTCA GGAAGTATGT CTACCGAAGA AATTACCCAA
GTGGTTGATT ATGATCCCGA TTATGATTAT CCCCCTTTAA GTGGCTCGGG TTACAGTGGC
GACCGAATCT ATTACACCGT TGGTGGCGGT GCATTACCAA CGCCCGATAC TACTTCTGAT
AGGCGATATT TTAATGCCAC TATAAATGGT TGTAACCAAA GTAAAGTTGC ATTGGATCAA
TTTGGTCGTT TTACGGGTTA TATTCGCGAG TTCACCTCAA GCGGAACAAC GGGAGTATGG
AAAGAATTTC CCGAGACCGA TGGTCGTAAC ATTAAGGTGG TTGATTGTTG GGAAGATATC
TCAACAGTTG ATCCTCAAAA CTCATCTCCT TACTCTAACG GTTTCCCCGC TAATGGATTA
ACGACAGGTT CAGGTAAAAA TAAGAAAGCG TTTCCATATA ATACTTCTTC ATCACCTGGA
ACTACTTGGG CTAATGCGTT AGCTGCCGCC AAGAATACCG GCTTTGGTGT TGGTCAACCC
GTCACTTTTT ATACAGACAA CTATTTGAGA TGGTATTGGT TATCAAAAGA AGGAAGATTG
CCAACTATAA AAGTTCCTAG GATAGATATC GCGAAGAAAG CGATTTCTAA CATTATTAGA
TCTACACCAA CTGTTGATTT TGGATTGGCT GTTTTTAATT ACAATTACCC TAATGAGGGT
AATCGGGATG GAGGCAGGAT TGTTTCTGGT ATTACTCAAA TGACGGATAC CTCCCGAGCC
AGTTTACTCT CAACTATTGA TGGTTTGCCT GCTAAAACAA ATACACCTTT GTGTGAGACT
ATGTATGAAG CCTATCGTTA TTTTGCCGGC AAAGGTGTCG TTTTTGGACA CGCGGATACC
GATTATGGCT CTTATGTAGG CAATCGTCCT CCATATGATA ATTCGGTAGA AACTAATGGT
ACTTACGTTA GCCCATTTAA AGTTTGTACT GATATTGCCT ATGTGATTTA TGTTACCGAT
GGCTCGCCAA CAGTTGATGG AAGTGCCAAT AACAATGTTA AAACTCTAAC CGCTGCGGCA
AGTAAAAGCG GTAATTATTC TTCATTTTCT CAGGGATTAA GTACACCAAG TTATTTGCCT
GCATTAGCAA GTTATATGTT TAATAATGAT TTGATTAACA AACCTGATAG TTCAAATACT
GAGCAAATGC AAAATGTACG GACTTATACT ATTGGTTTTA GTAAAGGTGC TGATGATGCT
GCGCCATTAT TAGCTGAAAC GGCTAAACGT GGCGGTGGAT TATATTTTGC TGCACAGAAT
AGCTTAGAGC TACAAAATGC ACTTAATGAC GCCTTATCTA ATATTTTAAA TATAGACTCC
AGTTTTACAT CTCCCAGTAT TGCTAGTAAT AACTTTGATA GAACTCAGAC CTTTGATGCC
GCTTATTATG CGATGTTCTT ACCAGGAAAA GGGCCACGAT GGAGTGGAAA TCTTAAGAAA
CTAAGAGTAA CAGCTGATGG CACTTTAGTT GATGGTGAAG GTAATGCAGC CATTGCTGAT
AATGGTAATA TTAAAGAGAC TGCCTGTACG ATTTGGACTG ATTGTACAAG TCAAAAGGAT
GGTAATAAAG TTGAGGTTGG TGGTGCAGCC GCGCAACTTA GAGGTCAGTT GAATCGTACT
ATATTAAGTA ATTTGGCGGG GACGAGTAGT TTGTCGCCAC TTACATTATC AAATGCCCAG
AATGCTGCTG GAGGAGAGCA AGCATTAGCG ACCTTCATGA GAACCGACAT TGATGAAGTG
GCTAATACTT TAGACTGGCT TAAAGGTATT GATGTAGATG ATGATAATAA AAATGGAAGC
ATTACAGATA AACGTAATGA TGTAATGGGC GATCCCTTAC ATTCGAAGCC TCTAGCATTG
AATTTTGGTA GTGAAACGGC CACGGATATC CGAATTATTT TGGGCACAAA CCAAGGTGTT
TTACATATGT TCAAAGATGC TGGTGAGTCA GTGTCAGAAA CATGGGGATT TATACCCTAT
GAGCTTTTAC CAAATTTAAT CGAGCTTAGA ACGAATGACC CATCAGGAGT TCACACTGTA
TATGGAATGG ATTCATCTCC CGTTGCTTAT ACCGAAACTG ATTCTACCGG TAAAGTAAAC
AAGGCTTGGG TTTTTGTCGG TATGCAGCGT GGTGGTTCAT CTTATTATGC TTTAGATGTG
TCTAATCCAG ACAGCCCCTC ACTTATGTGG ACTATTAATC CTTCTAGTGA TGGTTTTGTC
GATCTAGGTC AGACATGGTC GGAGCCTATC GTGACTAAAA TCGTGGGTTA CGATAAACCA
GTATTAATTT TTGGCGGTGG TTATGACGAG AGCTTTGATG CGACGCCGAC TACTTCGCCA
CAAGGTCGCG CTATTTATAT TGTTGATGCA CAAAAGGGAA CGCTGATCCA TTCTTTTGGC
GGTTCGGCTA GTGGGGCAAC AGTGCTTCCT GGTATCCAAG GCAGCATTCC TAATTCAGTG
GCTGTATTAG ATAGTAACAA TGATGGTTAT ACTGACCGTA TCTATGCTTC TGATGTTACC
GGTAATATAT GGCGTATGGA TTTACCTACA GCAAGTTCAG GTACGTGGAC CGCTTTTAAG
TTTGCTTCAT TGGGTGGTTC AAATAGCGAT AATAGACGCT TCTTCGCAGA ACCCGTAGTT
GCGCAAACAA TGTTTACCAA TTTGTCCGAA GTATCGGTGA CAACCGGAAC GGAAACTGTG
ACAACTAAAA CACACCAAAA TGTTCCCTAT GATGCCGTTG CCGTGGGCAG TGGAATGAGG
TCAAGTCCTT CAAGTACTAA CGTTAATGAT ATGTTTTTTA TGCTTCAGGA TCGTAACGTC
GTCACTAAGA GTTTTACTGG AAGTAATGTA CCCGCGACCA TTACTATTAA TAATTTGTAT
GATGTAACAT CAAGTGCCCC AACTTCAGAG ACGGATAATA TTAATTTCGG GACTAAATTT
GGTTGGTTTT ATGATTTTTC GGGACTCGGT GAGAAAAGCT TGACGGCGGC ACTGATTGTT
CAAGGAAAAG TATATTTTAC CTCCTATTCA CCGCCAGCTG ATTCTGTTGC TGATAACGTT
TGTTTAGTTT CTGGTGCTGG CAAGCTTTAT GCGTTTGATT TACATAAAGG AACCAGATCT
TTTTCTCAAT TATATTACGA ACTTGGAGAA AGAGTTCCTG ACACTCCGCA AATTGTGATC
CCAGCCCCTG AAACGGGTAA AGATCCTTAT ATCTATATTA TTGGTGTCGG GAAAGGCGAT
ATAAATGAAA ATGGTGAATA TAGTGGCACG ATAAACGTCG CTTCTGGTTT AGGTGTCAAT
AAAATTTATT ACCATATAGA TGAATAA
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| Protein sequence | MLIKKLTFCT LLALASTSIS SFGDDTELYV KESSTRTGAR PKVLVIFDNS GSMSTEEITQ
VVDYDPDYDY PPLSGSGYSG DRIYYTVGGG ALPTPDTTSD RRYFNATING CNQSKVALDQ
FGRFTGYIRE FTSSGTTGVW KEFPETDGRN IKVVDCWEDI STVDPQNSSP YSNGFPANGL
TTGSGKNKKA FPYNTSSSPG TTWANALAAA KNTGFGVGQP VTFYTDNYLR WYWLSKEGRL
PTIKVPRIDI AKKAISNIIR STPTVDFGLA VFNYNYPNEG NRDGGRIVSG ITQMTDTSRA
SLLSTIDGLP AKTNTPLCET MYEAYRYFAG KGVVFGHADT DYGSYVGNRP PYDNSVETNG
TYVSPFKVCT DIAYVIYVTD GSPTVDGSAN NNVKTLTAAA SKSGNYSSFS QGLSTPSYLP
ALASYMFNND LINKPDSSNT EQMQNVRTYT IGFSKGADDA APLLAETAKR GGGLYFAAQN
SLELQNALND ALSNILNIDS SFTSPSIASN NFDRTQTFDA AYYAMFLPGK GPRWSGNLKK
LRVTADGTLV DGEGNAAIAD NGNIKETACT IWTDCTSQKD GNKVEVGGAA AQLRGQLNRT
ILSNLAGTSS LSPLTLSNAQ NAAGGEQALA TFMRTDIDEV ANTLDWLKGI DVDDDNKNGS
ITDKRNDVMG DPLHSKPLAL NFGSETATDI RIILGTNQGV LHMFKDAGES VSETWGFIPY
ELLPNLIELR TNDPSGVHTV YGMDSSPVAY TETDSTGKVN KAWVFVGMQR GGSSYYALDV
SNPDSPSLMW TINPSSDGFV DLGQTWSEPI VTKIVGYDKP VLIFGGGYDE SFDATPTTSP
QGRAIYIVDA QKGTLIHSFG GSASGATVLP GIQGSIPNSV AVLDSNNDGY TDRIYASDVT
GNIWRMDLPT ASSGTWTAFK FASLGGSNSD NRRFFAEPVV AQTMFTNLSE VSVTTGTETV
TTKTHQNVPY DAVAVGSGMR SSPSSTNVND MFFMLQDRNV VTKSFTGSNV PATITINNLY
DVTSSAPTSE TDNINFGTKF GWFYDFSGLG EKSLTAALIV QGKVYFTSYS PPADSVADNV
CLVSGAGKLY AFDLHKGTRS FSQLYYELGE RVPDTPQIVI PAPETGKDPY IYIIGVGKGD
INENGEYSGT INVASGLGVN KIYYHIDE
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