Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3521 |
Symbol | |
ID | 1171194 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 3675517 |
End bp | 3676011 |
Gene Length | 495 bp |
Protein Length | 164 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637345322 |
Product | type IV pilus biogenesis protein, putative |
Protein accession | NP_719068 |
Protein GI | 24375025 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4970] Tfp pilus assembly protein FimT |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTACTA TCTCAAAAGG TTTTACTTTG GTTGAACTGA TGGTTACCAT CGCGATTGCA GCTTTGCTCC TTTCTGTTGG CGTCCCATCA TTTACTGCAA TCTATGAAGC GACTCGCAGC GCAAATGAAA TGCAAAAAAT CAATGACCTC TTTGCCTTTG CTCGAAATCA AGCAGTGAAT TACGGTGCTA CTGTCACGGT ATGTCCCTAT GCAGCAACGC CCTGTGGTAA TGACTGGACT AAAGGGTTTA GTGTGTATAT TGAGAATAAT GGCGCGAAAA AAGTCCTTAA GGTAATAGAT GGGTTTAGCT CTAAAGACAC TATCTCATTA ACTGGCCCAA CTGATAAAAC CGTGAACTTT ACTCCTGATG GCTTAGTTTC TACTGAGACA TCAATTATAT ATTGTCCTAG CGGAGAAAGT GATGGTTCTA AAAGCATTAA AATTAGCACA TCAGGCTTGA TTAAAGAGGG AAGTGATAAT CAAAGCTGCT CATAA
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Protein sequence | MFTISKGFTL VELMVTIAIA ALLLSVGVPS FTAIYEATRS ANEMQKINDL FAFARNQAVN YGATVTVCPY AATPCGNDWT KGFSVYIENN GAKKVLKVID GFSSKDTISL TGPTDKTVNF TPDGLVSTET SIIYCPSGES DGSKSIKIST SGLIKEGSDN QSCS
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