| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3483 |
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| Symbol | |
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| ID | 1171158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 3629924 |
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| End bp | 3631033 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637345288 |
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| Product | HlyD family secretion protein |
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| Protein accession | NP_719032 |
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| Protein GI | 24374989 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA CCATAATAGC CATTGCCTTA ATTGCTACGG TTGCTACTGC TGTGAGCTTT
AGTGATGTAC TGCAAGCGGC CAAACCTGAA AGCGCTCCCC AACCTATGCG CACCGTACCC
GTGGTAACAG GGGAAGTCGT TGAGCACCCA CTGGCACAAT CTGTTTCGTT GATTGGTAAA
TTGGCCGCCG ATCGCGCGGT CGTCATTGCG CCGCAAGTCA CAGGCAAAAT TAAGCAAATT
GCTGTAGTGT CAAATCAAGC GGTGAAAAAA GGTCAGCTCC TTATCGAGCT CGATGATATG
AAAGCGCAAG CCGCCGTTGC CGAAGCCAAT GCTTTTTTAA ATGATGAAAC CCGTAAACTC
AAAGAGTTTG AAAAACTCAT CAGCCGTAAT GCAATTACTC AGACGGAAAT CGATGCTCAA
AAAGCCAGTG TCGATATTGC TAGGGCTCGT CTAGCCTCTG CACAAGCGGA TTTACATTAC
CATTCCCTTA TCGCACCTTT TGCCGGACAA ACCGGCCTGA TCAACTTCAG CGAAGGTAAA
ATGGTCAGCA CGGGTAATGA GTTGATGACA TTGGATGACT TGTCTAGCAT GCGACTCGAC
TTACAAGTGC CAGAGCATTT TCTGTCTCAA ATCAGCATAG GTATGCCCGT ATCGTCCACC
AGCCGTGCAT GGCCGGGGGA AACCTTTATC GGCAAAGTGG TTGCCATCGA TCCCCGCGTG
AATGAAGAAA CCTTAAACCT GAAGATCCGC GTGCAATTTG AAAACACCGA TAATCGCTTA
AAACCCGGTA TGATGATGTC ATCCACCATC ACCTTCCCGC CAATTTCAGC CCCGATTGTG
CCAGTGCAAG CCTTAGAATA TTCAGGCACT AAACGCTATG TCTATGTGGT TGGAGAGGAT
CATATTGCCC ATCGCACAGA AGTGATTTTA GGGGCGCGGG TGGGCGATCA AGTGCTCATC
GATAGCGGTC TTAAGATTGG CGATAAAGTG GTGGTTCAAG GGCTTGTAAA TATGCGCGAT
GGCTTAAAAA TAAATGAAGT CGCTCTTGAA GCTAAAAATA GTAATAACCG CCCAGCCAAG
TCAGACGTCA ACACTGCGGA GACGAAATAA
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| Protein sequence | MKKTIIAIAL IATVATAVSF SDVLQAAKPE SAPQPMRTVP VVTGEVVEHP LAQSVSLIGK
LAADRAVVIA PQVTGKIKQI AVVSNQAVKK GQLLIELDDM KAQAAVAEAN AFLNDETRKL
KEFEKLISRN AITQTEIDAQ KASVDIARAR LASAQADLHY HSLIAPFAGQ TGLINFSEGK
MVSTGNELMT LDDLSSMRLD LQVPEHFLSQ ISIGMPVSST SRAWPGETFI GKVVAIDPRV
NEETLNLKIR VQFENTDNRL KPGMMMSSTI TFPPISAPIV PVQALEYSGT KRYVYVVGED
HIAHRTEVIL GARVGDQVLI DSGLKIGDKV VVQGLVNMRD GLKINEVALE AKNSNNRPAK
SDVNTAETK
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