Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3477 |
Symbol | |
ID | 1171153 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3622553 |
End bp | 3624343 |
Gene Length | 1791 bp |
Protein Length | 596 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637345283 |
Product | pilin biogenesis protein-related protein |
Protein accession | NP_719026 |
Protein GI | 24374983 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAGAGG CGAGTAGTCG CACCCTATAC AGTAATTTAG GCAGTGGATT GAGCGCTTTT ACTCTGTCAA ATGCTTCTCG TAAAGCAGGT GGTAATGCGC GTTTAGCGAC CTATATGGGC GTTGATGAAA CGGAGCTCAC TGGGCTGTTT GACTGGGCCA AAGGGATCGA CGTTGATAAC GATAAGAATC AGGACTTAAC TGCCGCTAGT GGCGCAACCC CAAATTGGCG CACCGATATT ATGGGAGATG CTTTACATTC CAAGCCCTTA GCACTGAATT TTGGTTCTGA AGCTAAACCC GATATCCGAA TTCTTGTCGG GACTAACCAT GGTTTCCTGC ATATGTTTAA GGATAAAGGC GACAGCGTGT CTGAAGCTTG GGGATTTATG CCCTATGAGC TACTGCCGAA TATTCGCGAT TTGAAGGCGA ATGCACCAAC AGGGGTGCAC TCCGTTTATG GTATTGATGG CTCGCCCGTT GCTTATACCA AAATGCAGGG AAAACGTATT GAAAAGGCAT GGGTATTTGT GGGAATGCGC CGTGGTGGCA ATGCGTATTA CGCCCTCGAT GTGACCAGCC CCGATAACCC CAGTTTTATG TGGAGGATTG ATGCAAGCTC ACCCGGTATG GGTGAGTTAG GGCAATCCTG GTCGACGCCT GTGGTGACGA CAATCCCCAG TGCCACTGGC GATAAGCCAG TATTGATTTT TGGTGGCGGA TATTCCCCTT CAACTAAAGA TGGCGCTGAG ATTGGCACTG ATGACAGCCG TGGCCGTGGC GTATTTATTG TCGATGCGCA AACCGGCAGT TTAATCCATC AATTTGGCGG CAGCGGGGCG AACACCCCAT TGCCCGGTAT TGCTAATAGT ATTCCGAGCA GTGTTGCTGT ATTGGACGGC AATGGCGATG GCCTTACGGA TAGGATTTAT GCCACTGATA TACAAGGTAA TGTGTGGCGG ATGGACATGC CTTCTGCGAA TACTTCGACT TGGTCAGGAT TTAAATTCGC TGCATTAGGG GATAAGAGTT CGGTTGCGGG CGATCGGCGA TTTTTTTCTG GGCCAATAGT GGCGCAAACC TTGATTTCCA ATACCTTTGA GCTGACTAAA GTCGTTAATG GAAAATCGAC CAAAGTGGTC ACGTCACAGA ATATTCCTTA CGACGCAATT GTTATAGGCA GTGGTCATAG GGCCAAACCA AGTGATGTGT CTCGCTCGGA TATGTTTTTT ACATTGCAAG ATAGAAACAT TGTGACCCAA TCATTCCAAG GTAAGTCGAA TCAAAAGCCT GTGCCTAAAA CGCTGCAACT AAGTGACTTA TATGATGTCA CGGCAGCGGC GCCAAGCGAT CAAGCCAGCG AGATAGCCTT TGGTCAAAAA CGCGGTTGGT ACTATAACTT CTCTCGTAAA GGCGAAAAGA GCCTTTCGTC CGCGACCATA GTCGGGGGGG AAGTATATTT CACCAGTTTT GTGCCCGGTA GTGATGGCTC GGTGAATCAA TGCTTGAGTT CGGGTAAGGG GTATCTCTAT AAAAAGAATT TACACAGGGG CACTCGTGGT TACAAAACGG ATTATTTATA TGCAGGCGAA CTGGTACTGG ATACGCCGCA GTTGGTGATC CCGCCCGCCG AGCAGCCTAA GGACCCGAAT GCCAAAGTAC CAACGCCAGA TATGTTTTTG ATTGGTATCG GTAATGCGGC GCCAGATGAA GCGACATGTG AAAGTGGTAA CCCTAAATGT ATAGGTGGCG GGCCAACAAC GAACAAAATT TATTATTACA TCAGTCAATG A
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Protein sequence | MQEASSRTLY SNLGSGLSAF TLSNASRKAG GNARLATYMG VDETELTGLF DWAKGIDVDN DKNQDLTAAS GATPNWRTDI MGDALHSKPL ALNFGSEAKP DIRILVGTNH GFLHMFKDKG DSVSEAWGFM PYELLPNIRD LKANAPTGVH SVYGIDGSPV AYTKMQGKRI EKAWVFVGMR RGGNAYYALD VTSPDNPSFM WRIDASSPGM GELGQSWSTP VVTTIPSATG DKPVLIFGGG YSPSTKDGAE IGTDDSRGRG VFIVDAQTGS LIHQFGGSGA NTPLPGIANS IPSSVAVLDG NGDGLTDRIY ATDIQGNVWR MDMPSANTST WSGFKFAALG DKSSVAGDRR FFSGPIVAQT LISNTFELTK VVNGKSTKVV TSQNIPYDAI VIGSGHRAKP SDVSRSDMFF TLQDRNIVTQ SFQGKSNQKP VPKTLQLSDL YDVTAAAPSD QASEIAFGQK RGWYYNFSRK GEKSLSSATI VGGEVYFTSF VPGSDGSVNQ CLSSGKGYLY KKNLHRGTRG YKTDYLYAGE LVLDTPQLVI PPAEQPKDPN AKVPTPDMFL IGIGNAAPDE ATCESGNPKC IGGGPTTNKI YYYISQ
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