Gene SO_3469 details

Gene Information

• Locus tag: SO_3469
• Symbol: ribD
• ID: 1171145
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 3614172
• End bp: 3615317
• Gene Length: 1146 bp
• Protein Length: 381 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 637345275
• Product: riboflavin biosynthesis protein RibD
• Protein accession: NP_719018
• Protein GI: 24374975
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTGGT CAGTACTCGA TAACCAAATG ATGAGCCGAG CTATTCAATT GGCTCGCAAA 
GGATTTTATA CCACTCGCCC CAATCCCAGT GTGGGCTGCG TTATCGTTAA CGATAACCAG 
ATTGTCGGTG AAGGTTATCA TCAAAAAGCC GGAGAGCCCC ACGCTGAAGT GCATGCGCTG 
CGCATGGCTG GCGAGCTTGC CCGTGGCGCG ACTGCTTATG TCACCTTAGA ACCCTGCAGC 
CATTATGGTC GTACGCCGCC CTGCGCCTTG GCGCTGATCA ATATTGGTGT AAAGCGGGTG 
GTGGTGGCGG TTGAAGATCC TAATCCGCAG GTCGGCGGGC GCGGTATTCA AATGCTGCGC 
GATGCGGGTA TTCAAGTGGA TGTGGGCTTG CATCGTGATG AGGCCTATGC CTTAAATCTT 
GGTTTTATGA AGCGCATGGA GTCGGGTCTA CCTTGGGTGA CGGTAAAGCT TGCCGCGAGT 
CTTGATGGTA AAACTGCGTT ATCAAACGGG GTGTCTAAAT GGATCACTGG CCCTGAAGCT 
CGCCGCGATG TGCAGCGCTT AAGATTACGA TCCTGCGCGC TGATCACGGG GATTGAAACG 
GTACTGGCCG ATGATCCATC GCTCAATGTG CGCTACTCAG AGCTTGGCAG TTTAAGAGCG 
CAATTGAGTG AGTCGCAGGT TTTACAGCCG CTGCGAGTGG TTTTGGACAG TCGCGCCCGC 
ATGCCTATCA CGGCAGCATT GTTTGCGATT GAATCACCCA TTTTATTAGT CTCGACAGTG 
AGCTATTCGT CAGACTTTAT GGTGCAATTA CCCGCCCATG TGACTTGCCT CCAATTACCA 
GCCATTGAGG GTCGAATCTC CTTGTCTGCA CTATTAAGCT ATTTAGGCAA AAGCTGTAAT 
CAGGTGCTTA TCGAAGCGGG CGCGACTTTA GCTGGCGCCT TTATCGGCTC AGGATTAGCC 
GATGAATTAG TGCTTTATCA AGCGATGAAA ATCCTTGGCG GCCAAGGACG TAATCTACTT 
GAATTACCCG ATTATCAAAT GATGGCCGAT ATTCCGACCC TCAAATTGGT CGACGAGCGT 
AAAGTGGGCG CGGATACGCG CTTCACCTTG AGGCTCGAGT CCAATCCATC TTTAGCGAAT 
AAGTGA 

 

Protein sequence

MNWSVLDNQM MSRAIQLARK GFYTTRPNPS VGCVIVNDNQ IVGEGYHQKA GEPHAEVHAL 
RMAGELARGA TAYVTLEPCS HYGRTPPCAL ALINIGVKRV VVAVEDPNPQ VGGRGIQMLR 
DAGIQVDVGL HRDEAYALNL GFMKRMESGL PWVTVKLAAS LDGKTALSNG VSKWITGPEA 
RRDVQRLRLR SCALITGIET VLADDPSLNV RYSELGSLRA QLSESQVLQP LRVVLDSRAR 
MPITAALFAI ESPILLVSTV SYSSDFMVQL PAHVTCLQLP AIEGRISLSA LLSYLGKSCN 
QVLIEAGATL AGAFIGSGLA DELVLYQAMK ILGGQGRNLL ELPDYQMMAD IPTLKLVDER 
KVGADTRFTL RLESNPSLAN K