Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3432 |
Symbol | rpoS |
ID | 1171107 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3577258 |
End bp | 3578238 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637345241 |
Product | RNA polymerase sigma-38 factor |
Protein accession | NP_718985 |
Protein GI | 24374942 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCGCA TAAATAGCAC TGCCGCAGAA GAACTAGTAG ATTTTTCCGT TGATACCGCT GAGTTTGATC TCGATAAAGA GGATATCGCC GCTGATTTAG TTCAAGAATT AGGACTCGAA CAACAGGTTC AAGATGACCT GCAAAAAAAT CTTGATGCCA CACAACTCTA TTTAGGTGAA ATAGGGTTTT CCCCACTGCT TAGCGCAGAA GAAGAAGTGT ATTTTTCCCG TAAGGCCTTA AAAGGCTGCG AAAAATCCCG TAATCGGATG ATCGAAAGTA ACCTGCGACT CGTGGTTAAA ATTGCCCGCC GTTACAATAA TCGTGGTCTT GCGCTGCTGG ATTTAATCGA AGAGGGTAAT CTTGGTTTGA TCCGTGCGGT AGAAAAATTT GACCCAGAAA GAGGTTTCCG TTTCTCAACC TATGCGACTT GGTGGATCAG ACAAACCATT GAACGCGCAA TCATGAATCA AACCCGTACG ATTCGCTTGC CTATCCATGT GGTGAAAGAG CTTAACGTGT ACTTACGTAC GGCCCGTGAA TTAGCGCAAA AACTTGACCA CGAGCCAACG GCAGAAGAAA TTGCCGAGAA ACTACAAGTC TCTAGTGTGG ATGTTAGCCG CATGCTGAAG CTCAACGAGA AGATCACTTC TGTTGATGTC CCTCTCGGCG GTGATAATGA TAAAGCCTTA CTCGATGTGC TGGCTGATGA TGATAACGTA GGCCCAGATT ACAAGGTGCA AGACGAAGAT ATTTCTAACT CAGTGGTTAA GTGGCTCAAT GAACTCAATA CCAAGCAAAG AGAAGTGTTA GCGCGCCGCT TTGGGTTATT GGGTTATGAG CCATCGACTC TTGAAGATGT GGGCGCTGAA ATTGGCCTTA CTCGCGAGCG AGTTCGTCAA ATCCAAGTGG AAGCCTTAAA ACGCCTGCGT GATCTGCTTG GCGCACAAGG GCTATCTGTA GAGGCTCTAT TTAGAAATTA A
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Protein sequence | MSRINSTAAE ELVDFSVDTA EFDLDKEDIA ADLVQELGLE QQVQDDLQKN LDATQLYLGE IGFSPLLSAE EEVYFSRKAL KGCEKSRNRM IESNLRLVVK IARRYNNRGL ALLDLIEEGN LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE LNVYLRTARE LAQKLDHEPT AEEIAEKLQV SSVDVSRMLK LNEKITSVDV PLGGDNDKAL LDVLADDDNV GPDYKVQDED ISNSVVKWLN ELNTKQREVL ARRFGLLGYE PSTLEDVGAE IGLTRERVRQ IQVEALKRLR DLLGAQGLSV EALFRN
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