Gene SO_3333 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3333 
Symbol 
ID1171015 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp3479321 
End bp3480766 
Gene Length1446 bp 
Protein Length481 aa 
Translation table11 
GC content45% 
IMG OID637345138 
Producttransporter, putative 
Protein accessionNP_718887 
Protein GI24374844 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTCAAAAC GTTTGTCGCT CCTATTATTC GGACTTGGAT TAACGCTCAC GCCCCCAGCC 
TTAGCGGAAT TCTCCTTGGC CCAAATTCCG CCACTATCTA ATAAGACTCC AATCACCTTG
GTTGCCGAAA AGGGATTTTG GACTGACTAC CTCACCCAAG AAATGCTGCC TAAATTTACC
GAAAAAACCG GTGTCAAAGT CAATGTAATT AGTACCGAGC TTGAGAGTAT GTTTGAGCTC
CAGACCCAAG CATTACTAAT GGGAGAAGGA AAATACGATC TGCTCACGAT GGAGGCTGGC
TGGGCAAAAG AATGGGCGGC TAACGGCTAT ACGGTACCAC TCCTTGAATT AGCCAAGCTG
TACGATCCAG ATGGTGAAAA AGCGATGGAA AGCTATCTCG AACCCTACTA TCCATCGTTA
CTTAATATTT TGTCCTATAA CAGAGAGTTG CACGCCATAC CCTACAATAA CTATGTGATG
GGAAGTCATT ACCGAGCCGA TCTATTTGAA AATAAAACCG AACAGGCTCA CTTTCTGCAA
CGTTTTGGCT ACCCACTAAA ACCCGCGACC AATGTTGAAG AATTAGCGGA TCAAGCCGTT
TTTTTTACGC GAAAAGCGGG GGAACTGCTT GCCGAAAAAC CATTAACCCA TGACTTTTAC
GGTTTGGCAT TAATGTCGGG TAATAAGCCC CATATCAACG ATGAGTTTTC GAGCATTATT
TGGAGTTTAG GCGGCGCTTG GATGTGGCCA ATCTATAACC AACAAAAAAA ACTAACTCAT
TTTGAAGTGC CTACCGTCAA TCAAGAGGCC ATAAAGGCAG GGCTTGCTTA TCGTCAACTC
ATGCCTTATG CCTACCCTGC TGATGATAAG TTTGCCTTCA ATGAAGCTGC AAACGCCATG
GCGACTGGCC AGGTCGCTAT TTGGCCCTTT GCTTACAACA ACCTTTGGCA CGCTTCCTTT
AAAGTCGAAG CCAATATACC GGGGGCTCGA CTTGGTGTTT CTCAAGTGCC GGGCGGAACC
CCCTATAATG GTGCTTATGC CTTTGCGGTA AGTTACGACA GTAAAAACCC TCAAGCCGCC
TATTGGTTAC TTAAGTATAT GGGCACCTTT GAGGCTCAAT ATGCCTATGC TCTTGGTGGC
GGAAATCCTT GCCGTATGGA TGTAGTCACT GCGCCCGAAT TTAAAAATGC CTCCAAAAGA
GCGATTGCGG GTGCATTTGA GGCCAGTCAC GTTGCTAACT TGTTCTGGTC TACTAAAGTA
TTGGAACTAG GACACTTTAC CTCTACTGCT ATGGGACAGA TATATCCTGA GTTAAGCCGT
GCTTGCTATG CAGCCAGCCA GCACGAAGCC AATATTACGG ATATTTTTAT CGAGTTAAGT
ACCAAAATTA AACAGTTGCA GAATACCCAT GGGGAAGTCC CTGCAATAGA CAAGAAAAAC
AAATGA
 
Protein sequence
MSKRLSLLLF GLGLTLTPPA LAEFSLAQIP PLSNKTPITL VAEKGFWTDY LTQEMLPKFT 
EKTGVKVNVI STELESMFEL QTQALLMGEG KYDLLTMEAG WAKEWAANGY TVPLLELAKL
YDPDGEKAME SYLEPYYPSL LNILSYNREL HAIPYNNYVM GSHYRADLFE NKTEQAHFLQ
RFGYPLKPAT NVEELADQAV FFTRKAGELL AEKPLTHDFY GLALMSGNKP HINDEFSSII
WSLGGAWMWP IYNQQKKLTH FEVPTVNQEA IKAGLAYRQL MPYAYPADDK FAFNEAANAM
ATGQVAIWPF AYNNLWHASF KVEANIPGAR LGVSQVPGGT PYNGAYAFAV SYDSKNPQAA
YWLLKYMGTF EAQYAYALGG GNPCRMDVVT APEFKNASKR AIAGAFEASH VANLFWSTKV
LELGHFTSTA MGQIYPELSR ACYAASQHEA NITDIFIELS TKIKQLQNTH GEVPAIDKKN
K