Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3333 |
Symbol | |
ID | 1171015 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 3479321 |
End bp | 3480766 |
Gene Length | 1446 bp |
Protein Length | 481 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637345138 |
Product | transporter, putative |
Protein accession | NP_718887 |
Protein GI | 24374844 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTCAAAAC GTTTGTCGCT CCTATTATTC GGACTTGGAT TAACGCTCAC GCCCCCAGCC TTAGCGGAAT TCTCCTTGGC CCAAATTCCG CCACTATCTA ATAAGACTCC AATCACCTTG GTTGCCGAAA AGGGATTTTG GACTGACTAC CTCACCCAAG AAATGCTGCC TAAATTTACC GAAAAAACCG GTGTCAAAGT CAATGTAATT AGTACCGAGC TTGAGAGTAT GTTTGAGCTC CAGACCCAAG CATTACTAAT GGGAGAAGGA AAATACGATC TGCTCACGAT GGAGGCTGGC TGGGCAAAAG AATGGGCGGC TAACGGCTAT ACGGTACCAC TCCTTGAATT AGCCAAGCTG TACGATCCAG ATGGTGAAAA AGCGATGGAA AGCTATCTCG AACCCTACTA TCCATCGTTA CTTAATATTT TGTCCTATAA CAGAGAGTTG CACGCCATAC CCTACAATAA CTATGTGATG GGAAGTCATT ACCGAGCCGA TCTATTTGAA AATAAAACCG AACAGGCTCA CTTTCTGCAA CGTTTTGGCT ACCCACTAAA ACCCGCGACC AATGTTGAAG AATTAGCGGA TCAAGCCGTT TTTTTTACGC GAAAAGCGGG GGAACTGCTT GCCGAAAAAC CATTAACCCA TGACTTTTAC GGTTTGGCAT TAATGTCGGG TAATAAGCCC CATATCAACG ATGAGTTTTC GAGCATTATT TGGAGTTTAG GCGGCGCTTG GATGTGGCCA ATCTATAACC AACAAAAAAA ACTAACTCAT TTTGAAGTGC CTACCGTCAA TCAAGAGGCC ATAAAGGCAG GGCTTGCTTA TCGTCAACTC ATGCCTTATG CCTACCCTGC TGATGATAAG TTTGCCTTCA ATGAAGCTGC AAACGCCATG GCGACTGGCC AGGTCGCTAT TTGGCCCTTT GCTTACAACA ACCTTTGGCA CGCTTCCTTT AAAGTCGAAG CCAATATACC GGGGGCTCGA CTTGGTGTTT CTCAAGTGCC GGGCGGAACC CCCTATAATG GTGCTTATGC CTTTGCGGTA AGTTACGACA GTAAAAACCC TCAAGCCGCC TATTGGTTAC TTAAGTATAT GGGCACCTTT GAGGCTCAAT ATGCCTATGC TCTTGGTGGC GGAAATCCTT GCCGTATGGA TGTAGTCACT GCGCCCGAAT TTAAAAATGC CTCCAAAAGA GCGATTGCGG GTGCATTTGA GGCCAGTCAC GTTGCTAACT TGTTCTGGTC TACTAAAGTA TTGGAACTAG GACACTTTAC CTCTACTGCT ATGGGACAGA TATATCCTGA GTTAAGCCGT GCTTGCTATG CAGCCAGCCA GCACGAAGCC AATATTACGG ATATTTTTAT CGAGTTAAGT ACCAAAATTA AACAGTTGCA GAATACCCAT GGGGAAGTCC CTGCAATAGA CAAGAAAAAC AAATGA
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Protein sequence | MSKRLSLLLF GLGLTLTPPA LAEFSLAQIP PLSNKTPITL VAEKGFWTDY LTQEMLPKFT EKTGVKVNVI STELESMFEL QTQALLMGEG KYDLLTMEAG WAKEWAANGY TVPLLELAKL YDPDGEKAME SYLEPYYPSL LNILSYNREL HAIPYNNYVM GSHYRADLFE NKTEQAHFLQ RFGYPLKPAT NVEELADQAV FFTRKAGELL AEKPLTHDFY GLALMSGNKP HINDEFSSII WSLGGAWMWP IYNQQKKLTH FEVPTVNQEA IKAGLAYRQL MPYAYPADDK FAFNEAANAM ATGQVAIWPF AYNNLWHASF KVEANIPGAR LGVSQVPGGT PYNGAYAFAV SYDSKNPQAA YWLLKYMGTF EAQYAYALGG GNPCRMDVVT APEFKNASKR AIAGAFEASH VANLFWSTKV LELGHFTSTA MGQIYPELSR ACYAASQHEA NITDIFIELS TKIKQLQNTH GEVPAIDKKN K
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