| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3216 |
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| Symbol | fliR |
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| ID | 1170908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3356767 |
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| End bp | 3357564 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637345031 |
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| Product | flagellar biosynthesis protein FliR |
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| Protein accession | NP_718771 |
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| Protein GI | 24374728 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAGCTGT TGCTCGATAC ATTAATGCAA ACCATAGCCT CCTATATGTG GCCATTGTTT
CGAGTTGCCA GCATGCTGAT GGTTATGGTG GTTTTTGGCG CGGCAACAAC TCCCACTCGG
GTGCGTTTAC TCCTTGCTAT TGCCATTACT TTAGCCATTG CGCCCGTGTT ACCCCCCGTT
AAAGATGCAC AATTATTTTC CTTAAGCGCC GTTTTTATTA CCGCTCAGCA AATTATTATT
GGCGTGGCCA TGGGCTTCGT GACCCAAATG GTGATGCAAA CCTTTGTGTT AACAGGGCAA
ATTATTGGTA TGCAGACCAG CTTAGGTTTT GCATCCATGG TCGATCCGAG TTCAGGCCAA
CAAACGCCGG TGATTGGTAA CTTTTTTCTG CTGCTCGCAA CCTTAATTTT TCTGGCCGTT
GATGGGCATC TATTGATGAT CCGTATGTTA GTGGCCAGTT TTGATACGCT GCCGATTTCT
AATGTTGGAT TAACCCTGAC CAGTTATCGC TCGTTGGCTG AATGGGGGTC CTATATGTTT
GGCGCGGCTT TAACTATGTC GCTTTCGGCG ATTATTGCGT TATTGCTCGT GAACTTATCT
TTTGGGGTGA TGACACGTGC TGCGCCGCAG CTCAACATTT TTTCGATTGG TTTTCCTATC
ACTATGATTG GTGGGCTGTT AATTTTGTGG TTAACCTTAA CTCCCGTTAT GGCTCATTTC
GATGAGGTAT GGGCATCGGC ACAGCTTTTG CTGTGTGATA TTTTAGGGCT TCAATGTCAA
GCCGATGGCA TTCTTTAA
|
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| Protein sequence | MELLLDTLMQ TIASYMWPLF RVASMLMVMV VFGAATTPTR VRLLLAIAIT LAIAPVLPPV
KDAQLFSLSA VFITAQQIII GVAMGFVTQM VMQTFVLTGQ IIGMQTSLGF ASMVDPSSGQ
QTPVIGNFFL LLATLIFLAV DGHLLMIRML VASFDTLPIS NVGLTLTSYR SLAEWGSYMF
GAALTMSLSA IIALLLVNLS FGVMTRAAPQ LNIFSIGFPI TMIGGLLILW LTLTPVMAHF
DEVWASAQLL LCDILGLQCQ ADGIL
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