Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3210 |
Symbol | fliA |
ID | 1170903 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3350155 |
End bp | 3350868 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637345026 |
Product | flagellar biosynthesis sigma factor |
Protein accession | NP_718765 |
Protein GI | 24374722 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAATAAAG CCGCAGCGTA TACTTGTTTA GACAATAAAA CGTCAATCGT TGAACAGTAT GCACCGTTGG TTAAAAGAAT TGCACATCAC TTGCTTGCCA GATTACCTGC CTCAGTGCAG TTAGATGACC TGCTACAGGC TGGGATGATG GGATTATTAG AAGCATCATC TAAGTTTGAT GGCGGTAAAG GTGCAAAGTT TGAAACCTTC GCCGGCATAA GGATCCGTGG CGCCATGTTG GATGAAATCC GCCGTGGCGA TTGGGTTCCT CGTTCTGTTC ACCGTAATAA TCGCCGAATT GCCCAAGCTA TTGATGAGTT AGAGCAAGTG CTAGGTCGTG ATGCGCGCGA CACAGAAATT GCAGAAAAAC TTGATATGAC GCTCGATGAG TACCATCATA TTCTTAACGA TGTTTCTGTT GGTAAAATCA TAGGGATAGA AGACTTAGGC GTATCAGAGG ATATACTCAC TACAAGCGAT AATGTTAGCG ATGGTACGTT TGAGGTATTG GCAGAAACCC AGTTTCATTC TGCACTTGTT GAGGCGATAA AAATATTGCC CGAAAGAGAT GCGCTAGTGC TATCGTTATA CTACGATGAA GCATTGAATT TAAAAGAAAT TGGCGCCATT CTTGAAGTAA GCGAATCGCG AGTTAGCCAG ATATTAAGTC AGGCAATGTT GCGACTCAAA GGCAAACTCA AGCAGTGGAC ATAA
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Protein sequence | MNKAAAYTCL DNKTSIVEQY APLVKRIAHH LLARLPASVQ LDDLLQAGMM GLLEASSKFD GGKGAKFETF AGIRIRGAML DEIRRGDWVP RSVHRNNRRI AQAIDELEQV LGRDARDTEI AEKLDMTLDE YHHILNDVSV GKIIGIEDLG VSEDILTTSD NVSDGTFEVL AETQFHSALV EAIKILPERD ALVLSLYYDE ALNLKEIGAI LEVSESRVSQ ILSQAMLRLK GKLKQWT
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