Gene SO_3111 details

Gene Information

• Locus tag: SO_3111
• Symbol: secD
• ID: 1170800
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 3239490
• End bp: 3241340
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637344916
• Product: preprotein translocase subunit SecD
• Protein accession: NP_718673
• Protein GI: 24374630
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTTAAATA AATACCCAAT GTGGAAGAAC ATTATGGTGG TGCTTATCAT CGCCATAGGT 
TGTTTCTATG CCGTACCTAA CCTGTTCGGT GAAGATCATG CGGTGCAAGT AGTGGCGACT 
CGAGGTGCTG AAGTCACAGC ATCTACCCAA GCCAGAGTGA ACGAACTGTT AGCCAGTAAG 
GGCATTGCGG TAAAGCGCTC TGAGCTTGAA AAAGGTCAAT TGTTGGTCCG TGTACAAAAC 
GCGGATCAAC AATTACTTGC AAAAGAAGTG ATTGCCGAAG CGTTAGGTGA CAAATTTACC 
GTGGCACTTA ACCTTGCTCC AGCAACCCCA AAGTGGCTCG AGTCTATGGG TGGTAGCCCA 
ATGAAACTCG GCCTCGATCT TCGTGGTGGA GTACACTTCC TGATGGAAGT GGATATGGGC 
GAAGCCATTC GTAAGATGGA AGAGGCCAAA GTGGCCGATT TCCGCTCACA ATTACGTGAA 
GAAAAAATCC GTTACGCTGG CATTCGCATT AATGCTCAAG GGATTGAAAT CAAATTCCGT 
GATGCAGAAA GTTTAGCCAG TGCAGAACGT TTCTTAAAAT CCCGCAGCAA CGATATGGTG 
TTCTCCGATG TAAGCAAAGG CGAAGATTTC GCCCTGCAAG CCGTGATGAG CGAAACCTAT 
CTTAAGCAGG TGAAAGAGGA AGCGTTGCAG CAAAACATTA CCACAATCCG TAACCGTGTT 
AACGAGTTAG GGGTATCTGA GCCTGTGGTG CAACGTCAAG GTGCTGAGCG TATTATCGTC 
GAGCTGCCTG GGGTTCAAGA TACTGCTCGT GCGAAAGAAA TTCTAGGTGC AACAGCATCG 
ATTGAATTCC ATATGGTCGA TGACAAAGCT GACGCTAATG CGGCGCAAGC GGGTCGCGTT 
CCTGCTGGTT CTGAGGTGTA TCAACGCCGT GAAGGTGGTC AAGTAGTGCT CAAGAAGGAA 
GTGATGCTAA CGGGTGATCA TATCACTGGC GCACAACCTA GTTTTGACCA ATACAGCCGT 
CCTCAGGTGA GCATTAACCT CGATGCTAAA GGCGGTACCA TTTTCTCTAA CGTGACAAAG 
GACAATATCG GTAAACCGAT GGCGACCTTG TTCATTGAAT ATAAAGACAG TGGTGAACGT 
AACGCTGATG GCAGCGTTAA GATGCTGAAA ATCGAAGAGG TGATTTCAGT AGCGACCATT 
CAAGCGCGTT TAGGCCGTAA CTTTGTTATC ACAGGTTTAA GCCATGGTGA AGCACAGAAC 
CTCGCATTAT TGCTGCGTGC GGGTGCTTTG ATCGCGCCAG TATCGATTGT AGAAGAACGT 
ACTATTGGTC CAAGCCTCGG TGCGGAAAAC ATCGCAAGCG GTATCAATGC CATGCTCTGG 
AGTATGGGGG CGGTCGTGCT ATTTATGCTG ATTTACTACC GTGCCTTTGG CTTGATTGCC 
AATATCGCCT TGACCATGAA CCTAGTGATG ATCGTAGGCG TGATGTCAAT GATCCCTGGT 
GCTGTTCTTA CCTTACCGGG TATTGCCGGT ATGGTATTAA CCATTGGTAT GGCAGTTGAC 
GGCAACGTAC TAATTTATGA GCGTATTCGA GATGAGATCC GCGCAGGACG TAGTGTGCAG 
CAGGCGATTC AAGAGGGGTA TGCCAATGCC TTTTCATCCA TTGCCGATTC GAACATCACC 
ACCTTTATCA CCGCATTGAT TCTCTTTGCC GTGGGTTCTG GCGCAGTAAA AGGTTTTGCT 
GTGACCCTGA TGATAGGTAT TGCAACCTCG ATGTTTACTG CAATCGTCGG AACCCGAGCC 
ATAGTGAACG CGGTTTGGGG TGGTAAGCGC ATTCAGACTC TGTCGATATA A 

 

Protein sequence

MLNKYPMWKN IMVVLIIAIG CFYAVPNLFG EDHAVQVVAT RGAEVTASTQ ARVNELLASK 
GIAVKRSELE KGQLLVRVQN ADQQLLAKEV IAEALGDKFT VALNLAPATP KWLESMGGSP 
MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK VADFRSQLRE EKIRYAGIRI NAQGIEIKFR 
DAESLASAER FLKSRSNDMV FSDVSKGEDF ALQAVMSETY LKQVKEEALQ QNITTIRNRV 
NELGVSEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDDKA DANAAQAGRV 
PAGSEVYQRR EGGQVVLKKE VMLTGDHITG AQPSFDQYSR PQVSINLDAK GGTIFSNVTK 
DNIGKPMATL FIEYKDSGER NADGSVKMLK IEEVISVATI QARLGRNFVI TGLSHGEAQN 
LALLLRAGAL IAPVSIVEER TIGPSLGAEN IASGINAMLW SMGAVVLFML IYYRAFGLIA 
NIALTMNLVM IVGVMSMIPG AVLTLPGIAG MVLTIGMAVD GNVLIYERIR DEIRAGRSVQ 
QAIQEGYANA FSSIADSNIT TFITALILFA VGSGAVKGFA VTLMIGIATS MFTAIVGTRA 
IVNAVWGGKR IQTLSI