Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3110 |
Symbol | secF |
ID | 1170799 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3238529 |
End bp | 3239476 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637344915 |
Product | preprotein translocase subunit SecF |
Protein accession | NP_718672 |
Protein GI | 24374629 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0341] Preprotein translocase subunit SecF |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAGAGA TTTTATCTTT AAAACGGACG GTAAACTTCC TTAAGCATGC CTTGCCGGTC AGTATTATGT CAGCCGTTCT TGTGCTTGGC TCCATCGTGC TATTGGCGAC TAAAGGCTTG AATTGGGGAC TGGATTTTAC AGGTGGTACA GTGGTGGAAA TGTCATTTTC GACCCCTGTC GACTTAAACC AGTTTCGTTC ACAACTAACA ACACCTGAAA CCAGTAGTGC CGTGGTGCAA AATTACGGTT CGAGCCGTGA TGTTTTAGTG CGCCTCCCGG TCAAAGAAGG TATCAGTAGT GATGTCCAAG TGGTGGAGAT TGTTAAATTT GCCCAGCAAC TAGATCCTAA TGTTGTGCAA AAACGAGTTG AGTTTGTTGG CCCACAAGTG GGTAAAGAAC TTGCCGAACA AGGCGGTTTA GCAGTTCTGG TTGCATTAAT CTGCATCATG ATCTATATCG CATTTCGCTT TGAGTGGCGC CTTGCCACCG GTGCAGTTGC GGCGTTAGCC CATGACGTGA TGGTAACTTT AGGCGTATTT TCACTCACGC AAATGGAGTT TGATTTAACC GTGTTAGCAG GGGTATTAAC AGTGGTTGGT TACTCCCTAA ACGATACCAT TGTGGTATTT GATAGGGTGC GTGAAAACTT CTTGAAAATG AGAAAAAGTG AGCCAGAAGA AGTGGTTAAC GTCTCTATTA CCCAAACTAT GAGTCGAACC ATCATTACTA TGGGAACCAC TTTAGTCGTA GTGGTGGCGC TGTTCTTAAG CGGTGGTTCC ATGATCCACG GCTTTGCGGC CGCGCTATTA CTTGGGATAA GTGTGGGGAC TTACTCTTCA GTTTATGTAG CGACCTATTT AGCCATTAAA CTTGGGGTGA ATCGCGAGTC GATGATGCCA GCTGAGATAG AAAAAGAAGG CGCTGATCAA CCATCAATGA TGCCGTAA
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Protein sequence | MLEILSLKRT VNFLKHALPV SIMSAVLVLG SIVLLATKGL NWGLDFTGGT VVEMSFSTPV DLNQFRSQLT TPETSSAVVQ NYGSSRDVLV RLPVKEGISS DVQVVEIVKF AQQLDPNVVQ KRVEFVGPQV GKELAEQGGL AVLVALICIM IYIAFRFEWR LATGAVAALA HDVMVTLGVF SLTQMEFDLT VLAGVLTVVG YSLNDTIVVF DRVRENFLKM RKSEPEEVVN VSITQTMSRT IITMGTTLVV VVALFLSGGS MIHGFAAALL LGISVGTYSS VYVATYLAIK LGVNRESMMP AEIEKEGADQ PSMMP
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