Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_2742 |
Symbol | |
ID | 1170441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 2858291 |
End bp | 2861728 |
Gene Length | 3438 bp |
Protein Length | 1145 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637344565 |
Product | sensor histidine kinase/response regulator |
Protein accession | NP_718326 |
Protein GI | 24374283 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG0591] Na+/proline symporter [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCTCA CCTTAGTCGT CGCCGTTATT GCTATTTGTT ATGTATCACT TTTATTCCTT TTAGCGTGGG GAGCAGAGCG CTGGTTTAGC GGCGTCACCA AGAAGCTGCA AGTGGTCATT TATGGCTTAA GTCTGGCGGT TTATTGTTCT TCTTGGAGTT TTTTGGGCAC AGTTGGACAA TCAGCTAAGG ATTTTTGGTC GTTCATTCCG ATTTTTGTTG GCCCGATCCT TATCTTCACC TTAGGGTTTG GCATGTTGCG CAAGATGGTT TTAGTGTCAA AAGCGCAAAA TATTACCTCT GTCGCCGACT TTATTGCCGC CCGTTACGGC AAGTCGCAAA CCTTAGCGGC CATTGTCACC TTAATCGCAA TGTTTGGCAT TATGCCTTAC ATTGCCCTGC AACTTAAGGC GATGGTGTTT AGCCTTAACC TGTTTCAACC CGCGGATGAC CCCTTAAATG GCGTTACGAT TGCGCTACTT ATCACCGCGC TATTAGCCAT TTTTGCCATT CTTTTTGGCA CTCGTAAGCT CGATGCTACC GAGCATAATC CTGGGATGAT GCTGGCGATT GCTTTCGAAT CCTTAGTTAA ACTCGCGGCA TTTTTGCTGG TGGGGATTGT GATTAGCTTT GGCGTATTTG ACGGGTTTGG CGATATTTGG CAGCAGGCGA GTGATAAATC GTTAATTCAT CACCCAAATC CCCGTATTGA AACCTTGATG CCCGAACTGC TTGTCGGTAT GGCGGCTTTT TTGTGTATGC CGCGGCAATT CCATGTGATG GTGGTGGAGT GTGCCGATGA GTCGGTGTTG TCTAAGGGAC GTTGGTTGTT TCCGCTGTAT TTGGCCTTAT TTGGCCTATT TGTCGGGCCA TTGGCCTTAG CGGGCAAATT GATCTTGGGC GATAGCGTTG CCGCTGACAC CTATGTGATT AATTTACCGC TTGCGTTAGA TCATCCGCTG CTGGCGGTGA TTGCGCTGTT AGGTACCTTA TCTGCGGCAA CCGGTATGGT GATTGTGGCT GTAGTGACAA TAAGTGTCAT GGTCAGTAAC GAATGGCTCG TCCCTGTGGT GCTGCGTACA GGTAATATCC GCGAGAAAAA CTTCAGTCAG TTTTCGCAGA TGCTACTAAA TGCCCGCCGC CTCGCGATTG TCATCATCCT TGGGCTGGGT TATGGCAGTT ATCTGGCGTT GGCCGATAGT GATTCGCTAT CACACCTTGG GATGCTGTCC TTTGGCGCAT TTGCCCAACT AGCACCGGCG CTCGTCGGTG GGCTTTACTG GAAGCACGGC AATCGTGCGG GGGTGTTTTT AGGCTTAAGT GTCGGTTTTA GCTTGTGGTT TTACATCATG CTCAGTGGCA TGACGGGTAA CCAAAGCCCT GCGGCATTAA TGTCGAGTAA TATCGACCTG TTAGATGCCA TCACGCCGAA TGTGCGCGAT GCGCTTACGG CATTATTTGC CAATATTGCC TGTTATGTGT TGGGTTCAAT TTGGTTCAGG GCTGGGGTGG CTGAGCGTAT TCAGGCCAGT GCTTTTGTTA GCCCGGGAAA GCTTAAAAAT AATGCCAGTA AGAAAAGCGG CCCTATCTCG CAGCAGGATT TACTGATCTT AGCCAGTCGC TTTGTGAGTC CAACCCGCGC CTATGAAAGC TTTAGTCGAT TCTCTACCGA AGCTGTTAAA AGTGACAGTT GGCATAAGGC TGCGACCCCT GAACTCATCG CCCATACTGA GCGCTTACTC GCTGGTGTGT TAGGCGCTTC GAGTGCTTCT TTAGTGATGG ATTCTGTCTT ACAAGGGCGT GACTTGGCCT TAGATGAAGT CTTTAGCCTT GTGGATGAGG CTTCATCTAA AATCATGCTC AGCCAAGATA TGCTGCGTGG AGCGATTGAG CATGCCTACG AAGGGATGAG TGTTATCGAT AGCGATCTTA ACTTAGTGGC ATGGAACTAT AAATATGTTG AGTTATATCA ATATCCCGAG GGATTTTTAC AGCAAGGTAT GCCTATCAGT GAAGTGATCC GCTTTAATGC TGCAAGGGGA TATTGCGGCA GCGGCGCTAT CGAGCAACAG GTTGAAAAAC GTGTGCAGCA TATGCGTAAT GGCACACCGC ATACCTCAGA GCGTCAGCGT AAAGATGGTA AAGTGATTAA AATTCAAGGT AATCCCATGC CCGATGGTGG TTTTGTGATG ACTTTTACCG ATATTACCCA ATATCGCCAG CAGGAACGGG CGTTACTCGA AGCCAATGAA ACGCTCGAAT CGCGAGTAAA AGAGCGTACT TTTGAATTAG CGATGTTAAA CAGTGAGCTG CTTGAGGCCA AAGCACAGGA GGAAATGGCT AACGCCTCTA AGAGCCGCTT TTTAGCGGCG GTGGGGCACG ATTTAATGCA GCCACTGAAT GCGGCAAGGT TGTTTACCGC CTCTTTATCC CAATATCCGA ATTTAGATCG TGAGGCGCGC ACCACCTTAT CCCATGTGAA TAGCTCGCTT AAAACCGCTG GTGAGTTGCT CACCGACTTA TTGGATATTT CGAAGTTGGA TTCCGGCATG GTGGACGTGA ACCGCCGCGA CTTTGCGATT TCAGAGCTGC TCAATGGGCT GTCGGTCGAA TTTGAGGCGA TGGCGGCGGA CAATCAAATT CGCTTCAAGA TGATCCCCTG TAGCGCGACG GTGAACTCCG ATCCTTCTTT GCTTAGGCGT GTGCTGCAAA ACTTTTTAAC CAATGCCTAC CGTTATGCCC GCGGAGGGCG AGTACTTTTT GGTTGCCGTC ATCGCGGCAG TGAATTGGAG ATCCAAGTGC TTGATACTGG CTGTGGGATT GATGAGCATG AAACACATGA AATCTTTAAA GAATTTAAAC GCTTAAATAA TCCTCGGAGT AAAAGTGTCA GCGGTTTAGG CTTAGGGTTG GCGATTGCCG ATAGGATAAG CCGCGTGCTA AACCACGGTA TTCAAGTGTC TTCGCAATTG GGGCGCGGCT CGGTGTTTTC TATTACTGTA CCCTTAGGTG AAACCGTGCG TCAGCCGCAG GTGAAGGCAT TGCCATCGTT ATTACAACCG TTATCCGGGA TTAAAGTGCT GTGTATCGAC AATGAGGAGG CCATTCTAGC GGGGCTTGAA AGTCTACTGA GTCGTTGGCA ATGCGAGGTG ATTTGTGCCA AAGACTTAGC CGATGCACGG ATTAAATTAG GCCTTAAAGG GGTGGCGCCC GATATCGTGT TAGCAGATTT TCACTTGGAT GATGGTCAAA ACGGTGTTGA TGCGATGGAT GGGATCCGCT CACTCTATGG CAAGGATTTA CCGGGTATTT TGATTACAGC CAATACCCGC AAAGAGCTGG TGGAAGATGT GCAGCGCCGC GGTTATCACT ATATGGCGAA AATGATTAAA CCGGCGGCGC TGCGGGCATT GATATCAAGC CTGGTCAAAA AGGCTTAA
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Protein sequence | MNLTLVVAVI AICYVSLLFL LAWGAERWFS GVTKKLQVVI YGLSLAVYCS SWSFLGTVGQ SAKDFWSFIP IFVGPILIFT LGFGMLRKMV LVSKAQNITS VADFIAARYG KSQTLAAIVT LIAMFGIMPY IALQLKAMVF SLNLFQPADD PLNGVTIALL ITALLAIFAI LFGTRKLDAT EHNPGMMLAI AFESLVKLAA FLLVGIVISF GVFDGFGDIW QQASDKSLIH HPNPRIETLM PELLVGMAAF LCMPRQFHVM VVECADESVL SKGRWLFPLY LALFGLFVGP LALAGKLILG DSVAADTYVI NLPLALDHPL LAVIALLGTL SAATGMVIVA VVTISVMVSN EWLVPVVLRT GNIREKNFSQ FSQMLLNARR LAIVIILGLG YGSYLALADS DSLSHLGMLS FGAFAQLAPA LVGGLYWKHG NRAGVFLGLS VGFSLWFYIM LSGMTGNQSP AALMSSNIDL LDAITPNVRD ALTALFANIA CYVLGSIWFR AGVAERIQAS AFVSPGKLKN NASKKSGPIS QQDLLILASR FVSPTRAYES FSRFSTEAVK SDSWHKAATP ELIAHTERLL AGVLGASSAS LVMDSVLQGR DLALDEVFSL VDEASSKIML SQDMLRGAIE HAYEGMSVID SDLNLVAWNY KYVELYQYPE GFLQQGMPIS EVIRFNAARG YCGSGAIEQQ VEKRVQHMRN GTPHTSERQR KDGKVIKIQG NPMPDGGFVM TFTDITQYRQ QERALLEANE TLESRVKERT FELAMLNSEL LEAKAQEEMA NASKSRFLAA VGHDLMQPLN AARLFTASLS QYPNLDREAR TTLSHVNSSL KTAGELLTDL LDISKLDSGM VDVNRRDFAI SELLNGLSVE FEAMAADNQI RFKMIPCSAT VNSDPSLLRR VLQNFLTNAY RYARGGRVLF GCRHRGSELE IQVLDTGCGI DEHETHEIFK EFKRLNNPRS KSVSGLGLGL AIADRISRVL NHGIQVSSQL GRGSVFSITV PLGETVRQPQ VKALPSLLQP LSGIKVLCID NEEAILAGLE SLLSRWQCEV ICAKDLADAR IKLGLKGVAP DIVLADFHLD DGQNGVDAMD GIRSLYGKDL PGILITANTR KELVEDVQRR GYHYMAKMIK PAALRALISS LVKKA
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