| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2609 |
|---|
| Symbol | yebU |
|---|
| ID | 1170311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 2745675 |
|---|
| End bp | 2747099 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637344436 |
|---|
| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
|---|
| Protein accession | NP_718194 |
|---|
| Protein GI | 24374151 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[S] Function unknown |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases
[COG3270] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCAAT TAAATCCAAA TTTTATCAAT ACAATTTCCC AAGAATTACC TGCTCATCTC
TCAATGGACG AATTTATTGC TGCTTGCGCG AGGCCACTTA GGCGTTCTAT TCGCGTCAAT
ACCTTAAAGA TCAGCAGCGA GGATTTTAAG CGTTTAATGC AGCCTAAAGG ATGGACATTT
GAGCCCATTC CTTGGTGTAA GGATGGTTTC TGGATAAGTT ACGATGAAGA AGAACAGCTA
GGCAACGCCC TAGAACATAT TCAGGGCTTA TTCTATATCC AAGAAGCCAG CTCCATGCTG
CCACCGACCG CACTATTTAC CCCCAATGCA GATTGGCAAT GTGTGTTGGA CTTAGCAGCA
GCCCCCGGTT CTAAAACCAC GCAAATGGCC GCCTTGATGA ACAATCAGGG CTTATTGGTT
GCCAATGAAT ATTCCGCAAG TCGCGTTAAA GTGCTTCATG CCAATGTGCT GCGCATGGGA
GCGAGCCACT GCGCCCTAAC CCACTTCGAT GGCCGGGTAT TTGGCGAATA TCTCTATGAA
AGCTTTGATG CGGTATTAAT TGATGCGCCC TGTGGCGGTG AAGGCACAGT CCGTAAAGAT
GTTGACGCCT TAAAATCTTG GTCGCTGGAT GAGGTTATCG CCATTAGTGA AACCCAAAAA
GCACTTATCG AATCGGCCTT TTTAGCGTTA AAGCCGGGTG GCAGTTTGGT GTATTCCACT
TGCACCCTCA ATCGGCACGA AAACCAAGGT GTGTGCGAAT ATTTGCAGCA AACTTATGGT
AATGCAGTAC AATTTGAATC CTTAAGCCAA CTGTTTGATG GTGCTGACAA AGCCACCACA
CCTGAGGGCT TTTTACACGT TTGGCCGCAG ATTTACGACA GCGAAGGCTT TTTTGTCGCG
AAACTGACTA AAACCCGCTC GGTACCTCGT CTTCAGCTTG AACCTAAGCT ACAAAAAAAC
TTCCCTTTTA CCGAGGCGAG TCCTAAACAA GCGAAAGCCA TTCAAGCGTA TTTTGCCGAT
GATCTGGGTA TCGAACTGCC CGATGAACTT ATCATGGTGC GCGACGACGA GTTTTGGCTC
TTCCCGCGTG AATTTACTGA CTTTATTGGC AAAATGCGCT TTCAGAGGAT AGGGCTTAAA
CTTGCTGATC ACAGTAAACA TGGCTTCAAG GTCCGCCATG AGGCCGTGAT TGCACTAGCA
AATACCCAAG CCAACATTAT CGAGATTAAT GATGAACAGG CCAAAGAATA CTTGATGGGG
CGAGATATTG CCCTCGATAC CGCCACAAAA GCCCAAGGCG AAATCATTGT CTGTTATGGT
GGTGCTCCCT TAGGTATGGC CAAACATTTA GGCAATAAAT TAAAAAACAA TCTACCCAGA
GACTTAGTGA AAGATAAGGT CTTATTGTTA CCATCGCAGG CATAA
|
|---|
| Protein sequence | MVQLNPNFIN TISQELPAHL SMDEFIAACA RPLRRSIRVN TLKISSEDFK RLMQPKGWTF
EPIPWCKDGF WISYDEEEQL GNALEHIQGL FYIQEASSML PPTALFTPNA DWQCVLDLAA
APGSKTTQMA ALMNNQGLLV ANEYSASRVK VLHANVLRMG ASHCALTHFD GRVFGEYLYE
SFDAVLIDAP CGGEGTVRKD VDALKSWSLD EVIAISETQK ALIESAFLAL KPGGSLVYST
CTLNRHENQG VCEYLQQTYG NAVQFESLSQ LFDGADKATT PEGFLHVWPQ IYDSEGFFVA
KLTKTRSVPR LQLEPKLQKN FPFTEASPKQ AKAIQAYFAD DLGIELPDEL IMVRDDEFWL
FPREFTDFIG KMRFQRIGLK LADHSKHGFK VRHEAVIALA NTQANIIEIN DEQAKEYLMG
RDIALDTATK AQGEIIVCYG GAPLGMAKHL GNKLKNNLPR DLVKDKVLLL PSQA
|
|---|
| |