Gene SO_2507 details

Gene Information

• Locus tag: SO_2507
• ID: 1170218
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 2633593
• End bp: 2635497
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637344342
• Product: GGDEF domain-containing protein
• Protein accession: NP_718094
• Protein GI: 24374051
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain; [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGATGT CTAAATCATA TCCCATTTTC TTATTGCTGG TTTTTTTAGG CTTGTTTGGT 
TGGGGTTATC AAAACGAGAA TAACCAGTTA CAGGCAGATC AACAGCAAGA ACTCAATAAT 
TTCAAACAAT ACATGGTTAA TTTTTCCCAA TGGCAAGGCA ATGGTAGCGA TCTTTACCAA 
AGCATCTCAA CACTCTACCC ATTGCAATTT TTCCAGTATA TCGACGATAC CGATGGTCAA 
CTTAATTACA CACAAGGCGA ACTCAACACT CAAATTTCCC AACCACTCGC AGGATTATTT 
GCCTTAGATT TATCCCATAC CCAAAAACTG GCAGCGGGTC GCTTACAAGT CAAATTAGCT 
GCCGACCAAG CCATTGAAAA TGCTATTGCC AACACTCAGC AGTTAGGACT CGTACTGCTG 
CTAACCTATA TTGTGTTGGT GGTTGTTTTT ATATTGCTTA TCAACAAAGT AAGAGCAGCT 
ATCCGTTATG CCGCCGATTA TATTACCCAC ATTCCAGAGA TGAACTTTTC AGCCATAGAG 
TCTTCCAAAC TTAATGGTGA AATGACCCCT GTCAGATTAG CGCTTGAGGA ATGCCGCGCA 
CAGTTAAAAT CGCAAATGGA TAGCCTCACA AATGAAAACC AAAAACTGCA TAAAGTAGCC 
TATCAAGATC CTATTACAGG CTTCGGTAGC CGTCCTCGTT TTACGACTAA ATTGGAAAGC 
ATTAGCAATC ACGCAGTTCC CCAACTAGGG TTAATGGCCA TGGTCAAAGC TACGGAATTG 
GCCCATATCA ACCAACTCCA AGGTCGCTCA GCAGGGGATG ATTATTTATC GAATTTAGCC 
ACTTGCATTC GCAAGGCCAG CTCAAAATAT CCCGATGCAG AGTGCTACCG CGTATCCAGT 
GCCGATTTTG CGATTTTTCT ACCTGATTTA GTGCTAAAGG ATGGACCTAA GTTTTTAGAC 
CAACTGAAGA TTTTACTCGA TGAATATCAA CAGATGATTA AAACTGAATC CGCTGCCCAT 
GTAGGACTTG TTCCTTACCA ACAGGGCGCG GATCCAGTCA ATTTGCTCTC ACTTGCTGAT 
ACGGCAGTCA GCATCGCGCA AACCCTCGGT CCCAATAGCT ATCATATTCA AGAAAAACTT 
AATGGTGATG AGCAATTTGG TGATGATCGT TGGAAATTAG CGATCAATGA CTTAATCACT 
CGCCAAGCGC TGAAGTTTTT CCAACAACCC ATTCAACCCT GCCGCAATGA TGTTGAGGTA 
TATCGCGAGC TACTCGCGCG CTTCTACAAC AGTGAAGGAA AGTTTTTGCC TACTACCACA 
GTCATCGCCA TGGCTGAACG TCATGGTATG AGCACTGAGT TAGATAAACT TGTGGTGATC 
AGTACATTAA AAATGCTTAA GGAAAATCCC ACCATTAGCG GCAATTTTGG CATCAATATC 
AGTGCATTTT CTGCCCATCA GGAACTGTTT GTTGGCTGGT TAAGGGATAT TCTTGGTAAG 
CATCGATATA TTGCCTCTCG CTTAGTGTTT GAGATCAACG AATCCGGTAT GCAAGCCAAT 
TTAGGGGCAA GTTATAAGTT TGTCCGCGAA GTTCATAGTG TGGGTTCAAG GGTATCGATT 
GAACGTTTTG GCATGAGCTT TACTTCGTTC AAATTCTTCA GCGAGGTGCG CCCAGACTAC 
ATTAAGCTCG ATGGAAGCTA CACCGCGTCT ATCGATGAAG ATAGTAACAA TAAGTTCTTC 
GTGCGCATGA TGGTGGACGT TGCTAGACGT ATCGGCATCC GCGTGATCGC CACCAGTGTT 
GAACGTCAAG AAGAAAAATT GACCCTCGAA AAACTCCTCG TCGATGGTCT ACAAGGCTAT 
TATATTTCGC AGCCACAGGG CATTACCTTA ACTGATCAAA TTTAA 

 

Protein sequence

MAMSKSYPIF LLLVFLGLFG WGYQNENNQL QADQQQELNN FKQYMVNFSQ WQGNGSDLYQ 
SISTLYPLQF FQYIDDTDGQ LNYTQGELNT QISQPLAGLF ALDLSHTQKL AAGRLQVKLA 
ADQAIENAIA NTQQLGLVLL LTYIVLVVVF ILLINKVRAA IRYAADYITH IPEMNFSAIE 
SSKLNGEMTP VRLALEECRA QLKSQMDSLT NENQKLHKVA YQDPITGFGS RPRFTTKLES 
ISNHAVPQLG LMAMVKATEL AHINQLQGRS AGDDYLSNLA TCIRKASSKY PDAECYRVSS 
ADFAIFLPDL VLKDGPKFLD QLKILLDEYQ QMIKTESAAH VGLVPYQQGA DPVNLLSLAD 
TAVSIAQTLG PNSYHIQEKL NGDEQFGDDR WKLAINDLIT RQALKFFQQP IQPCRNDVEV 
YRELLARFYN SEGKFLPTTT VIAMAERHGM STELDKLVVI STLKMLKENP TISGNFGINI 
SAFSAHQELF VGWLRDILGK HRYIASRLVF EINESGMQAN LGASYKFVRE VHSVGSRVSI 
ERFGMSFTSF KFFSEVRPDY IKLDGSYTAS IDEDSNNKFF VRMMVDVARR IGIRVIATSV 
ERQEEKLTLE KLLVDGLQGY YISQPQGITL TDQI