Gene SO_2447 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_2447 
Symbol 
ID1170162 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp2562546 
End bp2563199 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content43% 
IMG OID637344280 
Producthemolysin III family channel protein 
Protein accessionNP_718037 
Protein GI24373994 
COG category[R] General function prediction only 
COG ID[COG1272] Predicted membrane protein, hemolysin III homolog 
TIGRFAM ID[TIGR01065] channel protein, hemolysin III family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATCAAG AAAAACCTTT AAATATCAGT GCATATAGTC TAAGTGAAGA GATCGCCAAC 
AGCATTAGTC ATGGTCTAGG AGTGATTGCT GGTGCGGTGG GATTAATCTT TATGCTCCTC 
AAAGGTGTCG ATCATCTTTC TAGTATTCAA CTTACAGGCG TCATAATTTA CGGTGCAAGT 
CTCATTCTGT TGTTTTTAAG CTCAACCTTG TATCACAGCG TGACGCATCG TGGTTGGAAA 
CACAAACTGA AGATCGTCGA TCACTGTGCG ATCTACTGCT TGATTGCCGG CACTTACACG 
CCATTAATGT TAATCAGTCT GCAAGGCAAT CTGTCGACGA TTATCCTCAC GGCCATTTGG 
TCGCTTGCTA TTGGTGGGAT CCTCTTTAAG ACCTTATTTA TTCACCGGTT TAAAAAACTC 
AGTCTTGTGC TGTATCTAGC GATGGGTTGG CTTTGTATGA CGGTGATTGG GGATTTGACC 
GCAGCAATGT CGCCGCTCGG ATTTAATTTA TTGTTGTTGG GCGGGCTGTT TTACACCCTT 
GGAGTGATCT TCTATGTTGG CAAACGCATT CCGTACAATC ATGCGATTTG GCATCTGTTT 
GTGTTAGCAG GCGCCATGAG CCATTTCTTT TGTATTTATT TAACCGTGAT CTAG
 
Protein sequence
MHQEKPLNIS AYSLSEEIAN SISHGLGVIA GAVGLIFMLL KGVDHLSSIQ LTGVIIYGAS 
LILLFLSSTL YHSVTHRGWK HKLKIVDHCA IYCLIAGTYT PLMLISLQGN LSTIILTAIW 
SLAIGGILFK TLFIHRFKKL SLVLYLAMGW LCMTVIGDLT AAMSPLGFNL LLLGGLFYTL 
GVIFYVGKRI PYNHAIWHLF VLAGAMSHFF CIYLTVI