Gene SO_2299 details

Gene Information

• Locus tag: SO_2299
• Symbol: thrS
• ID: 1170024
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 2410456
• End bp: 2412384
• Gene Length: 1929 bp
• Protein Length: 642 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637344143
• Product: threonyl-tRNA synthetase
• Protein accession: NP_717895
• Protein GI: 24373852
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0441] Threonyl-tRNA synthetase
• TIGRFAM ID: [TIGR00418] threonyl-tRNA synthetase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTGTAA TTACTCTTCC TGATGGTAGC AAACGCGAGT TTGCACATCC CGTATCGACT 
CTCGATGTTG CCGCTGATAT TGGCCCAGGT CTTGCCAAAG CTTGTATTGC GGGTCGCGTG 
AATGGCGAAT TAAAAGACGC TTGCGATCTT ATCGAAACCG ATGCCGAACT TTCTATTATT 
ACCGCTAAAG ACGAAGAAGG TATTGAAATC CTTCGCCATT CTTGCGCGCA TTTATTAGGC 
CATGCAATCA AGCAATTATG GCCACAAACC AAGATGGCGA TCGGTCCTGT GATCGATAAC 
GGCTTCTATT ACGATATCGA TCTTGAGCAC AAACTGACTC AAGATGATAT CGAAGCCCTT 
GAAAAACGCA TGCTTGAACT GGCAAAAACC AATTATGACG TTGTTAAACG CGTTGTGAGC 
TGGCAAGAAG CCCGTGATAC CTTCGCCGCA CGTGGTGAAG AGTATAAAAT TGCGATTCTG 
GATGAAAACA TCAGCAAAGA TGCGACCCCT GCGCTGTATC ACCACGAAGA ATACACTGAC 
ATGTGTCGTG GTCCGCACGT GCCTAACATG CGTTTCTGCC AGCATTTTAA GCTGATGAGT 
ATTGCTGGTG CCTATTGGCG CGGTAACTCC GAAAACAAAA TGCTACAACG CATCTACGGT 
ACAGCTTGGG CGGATAAAAA AGCCCTGAGC ACCTATTTAG CTCGCCTCGA AGAAGCCGCT 
AAACGTGACC ACCGTAAGAT TGGTAAACAG CTTGATCTTT ACCATATGCA AGAAGAAGCA 
CCGGGCATGG TGTTCTGGCA TAATGATGGC TGGAGTATCT TCCTTGAATT AGAAAGATTT 
ATCCGCCGCA AACTCAATCA ATACACTTAC CAAGAAGTAA AAGGTCCGTT AATGATGGAC 
CGTGTACTGT GGGAACGTTC AGGTCACTGG GATAAATACT CAGAAGCCAT GTTCACCACC 
AGCAGTGAAA ACCGCGAATA TGCAATTAAA CCAATGAACT GTCCAGGCCA TGTGCAGATC 
TTCAACCAAG GGTTGAAATC TTACCGTGAT CTGCCATTGC GTATGGCTGA GTTTGGTTGC 
TGTCACCGTA ATGAACCTTC AGGTTCACTA CACGGTTTAA TGCGCGTACG TGGTTTTACG 
CAAGACGACG CCCATATTTT CTGTACTGAA GATCAAGTTC AAGCCGAAGT CAGCTCTTGT 
ATCCAAATGG TATACGACAC TTACTCCACC TTTGGCTTTG AAAACATTGT GGTAAAACTG 
TCGACTCGTC CGGAAAAACG TATCGGTGAC GATGCAATGT GGGACAGAGC CGAAGAAGCA 
CTCAAGCAAG CTTTACGTGC GAACAATATC GAATTCACCA TTTTACCGGG TGAAGGCGCC 
TTCTACGGTC CTAAGATTGA GTTTACACTC CATGATTGCT TAGACCGTGC ATGGCAGTGC 
GGAACTGTAC AGCTTGATTA CGCCTTACCA AGCCGTTTAG GTGCAACTTA TGTGGCGGAA 
GATAACAGCC GTCAAACACC TGTGATGATC CATCGTGCAA TTTTAGGTTC GTTGGAGCGT 
TTCTTAGGTA TTCTAATTGA AGAATATGCT GGTCGGTTCC CAACATGGTT AGCGCCAATG 
CAAGTTGTCG TGATGAATAT CACCGACAAA CAGGCTGATT ATGTTGAAGA AGTGGTCAAA 
TTCTTCAAAG AACAAGGTAT TCGTGCCTCA TTTGACTTGA GGAATGAGAA AATAGGCTTT 
AAAATACGCG AACACACCTT AAGGCGTGTT CCTTATTTAT TGGTCGTTGG TGACCAAGAG 
ATGGAAAATA AGGAAGTCGC GGTGCGTACT CGTGATGGAG TAGATTTAGG TAAGATGCGA 
ATAGAAGATT TCGCCGCTAA AATCCATCAA CAGATTTCGC TCCGTAGTCT CAAATTGTTG 
GAGGAATAG 

 

Protein sequence

MPVITLPDGS KREFAHPVST LDVAADIGPG LAKACIAGRV NGELKDACDL IETDAELSII 
TAKDEEGIEI LRHSCAHLLG HAIKQLWPQT KMAIGPVIDN GFYYDIDLEH KLTQDDIEAL 
EKRMLELAKT NYDVVKRVVS WQEARDTFAA RGEEYKIAIL DENISKDATP ALYHHEEYTD 
MCRGPHVPNM RFCQHFKLMS IAGAYWRGNS ENKMLQRIYG TAWADKKALS TYLARLEEAA 
KRDHRKIGKQ LDLYHMQEEA PGMVFWHNDG WSIFLELERF IRRKLNQYTY QEVKGPLMMD 
RVLWERSGHW DKYSEAMFTT SSENREYAIK PMNCPGHVQI FNQGLKSYRD LPLRMAEFGC 
CHRNEPSGSL HGLMRVRGFT QDDAHIFCTE DQVQAEVSSC IQMVYDTYST FGFENIVVKL 
STRPEKRIGD DAMWDRAEEA LKQALRANNI EFTILPGEGA FYGPKIEFTL HDCLDRAWQC 
GTVQLDYALP SRLGATYVAE DNSRQTPVMI HRAILGSLER FLGILIEEYA GRFPTWLAPM 
QVVVMNITDK QADYVEEVVK FFKEQGIRAS FDLRNEKIGF KIREHTLRRV PYLLVVGDQE 
MENKEVAVRT RDGVDLGKMR IEDFAAKIHQ QISLRSLKLL EE