Gene SO_1962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1962 
Symbol 
ID1169722 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp2067510 
End bp2068550 
Gene Length1041 bp 
Protein Length346 aa 
Translation table11 
GC content44% 
IMG OID637343845 
Product4-hydroxyphenylpyruvate dioxygenase 
Protein accessionNP_717569 
Protein GI24373526 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins 
TIGRFAM ID[TIGR01263] 4-hydroxyphenylpyruvate dioxygenase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAGCG AACTCAATCC ACTGGGCTTA TTAGGTATCG AATTCACCGA ATTCGCCAGC 
TCTGATACTG ATTTTATGCA CAAGGTGTTT ATCGATTTTG GTTTTTCGCT GCTGAAAAAA 
GCCAAAAATA AAGACATTTT GTACTACAAA CAAAATGATA TTAACTTTCT GCTCAACAAG 
CAGCGCGAAG GTTTCTCTGC TAAGTTTGCC AAATCCCACG GTCCTGCCAT TTGCTCCATG 
GGCTGGCGTG TGGAAGACGC GAGCTTTGCT CACCGTGTGG CGGTGGAGCG TGGTGCCAAA 
GCGGCCGATG ATTCGGCTAA AGATCTGCCC TATCCGGCGA TTTATGGCAT TGGCGACAGC 
TTAATTTATT TTATCGACAC CTTTGGTGCC AACAATAATA TCTATGCCAC TGACTTTGAA 
GACTTAAGCG AGCCAGTGAT CACCCAAGAG AAAGGCTTTA TCGAAGTAGA TCACTTAACC 
AATAACGTCT ACAAAGGCAC CATGGAGCAT TGGGCAAACT TCTACAAAAA CATCTTTGGT 
TTTACTGAAG TACGTTACTT TGACATCAGC GGCGTGCAAA CTGCGCTGGT GTCTTATGCC 
CTGCGCTCAC CCGATGGCAG CTTCTGCATT CCGATTAACG AAGGTAAAGG CAACGATAAG 
AACCAAATCG ATGAATACCT GAAGGAATAC AATGGTCCAG GTGTACAACA TTTAGCCTTT 
AGAAGCCGTG ATATCGTCAA ATCCTTGGAT GCGATGGAAG GCAGCTCTAT TCAATGCTTG 
GATATTATTC CTGAATATTA CGACACCATT TTCGATAAAG TCCCGCAAGT GACCGAAAAC 
CGTGATCGCA TCAAGCATCA CCAAATTTTG GTAGATGGTG ACGAATCAGG CTATTTATTA 
CAAATCTTCA CTAAGAACTT GTTTGGCCCG ATCTTTATTG AAATCATTCA ACGCAAGAAC 
AACTTAGGCT TTGGTGAAGG TAACTTTACT GCCCTGTTCC AATCGATTGA ACGGGATCAA 
ATGCGCCGCG GCGTACTGTA A
 
Protein sequence
MASELNPLGL LGIEFTEFAS SDTDFMHKVF IDFGFSLLKK AKNKDILYYK QNDINFLLNK 
QREGFSAKFA KSHGPAICSM GWRVEDASFA HRVAVERGAK AADDSAKDLP YPAIYGIGDS 
LIYFIDTFGA NNNIYATDFE DLSEPVITQE KGFIEVDHLT NNVYKGTMEH WANFYKNIFG 
FTEVRYFDIS GVQTALVSYA LRSPDGSFCI PINEGKGNDK NQIDEYLKEY NGPGVQHLAF 
RSRDIVKSLD AMEGSSIQCL DIIPEYYDTI FDKVPQVTEN RDRIKHHQIL VDGDESGYLL 
QIFTKNLFGP IFIEIIQRKN NLGFGEGNFT ALFQSIERDQ MRRGVL