Gene SO_1928 details

Gene Information

• Locus tag: SO_1928
• Symbol: sdhA
• ID: 1169690
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 2031615
• End bp: 2033381
• Gene Length: 1767 bp
• Protein Length: 588 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637343813
• Product: succinate dehydrogenase flavoprotein subunit
• Protein accession: NP_717535
• Protein GI: 24373492
• COG category: [C] Energy production and conversion
• COG ID: [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
• TIGRFAM ID: [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup; [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGTATTC CAGTACGCGA ATTTGATGCT GTAGTGATCG GCGCCGGTGG TGCGGGTATG 
CGTGCAGCAC TACAGATTTC TAAAGAAGGT AAGAGCTGTG CGCTTTTATC TAAAGTTTTC 
CCAACTCGTT CTCATACTGT GTCTGCGCAG GGTGGTATCA CAGTTGCGCT GGGTAACGCC 
CATGAAGACC ATTGGGAACA ACACATGTAC GATACCGTAA AAGGTTCCGA CTTCATCGGT 
GACCAAGACG CTATCGAATT TATGTGTCAA ACCGGTCCAG AAGCCATTAT TGAACTTGAG 
CACATGGGTT TACCATTCTC TCGTTTCGAT AACGGTAAGA TTTACCAACG TCCCTTCGGT 
GGTCAATCTA AAAACTTTGG TGGTGAACAA GCGGCACGTA CCGCAGCAGC GGCCGACCGT 
ACAGGTCACG CACTGCTTCA CTGCTTATAC CAACAGAACG TCAAACACAA AACACAAGTG 
TTTTCTGAGT GGTATGCCCT CGATTTAGTC AAAAACCAAG ACGGTGCCAT CGTAGGCTGT 
ACTGCGATTG AAATCGAGAC TGGTGAAATT GTTTACTTCA AAGCCAAAGC CACTGTGTTA 
GCAACAGGCG GTGCAGGTCG TATCTACGCA TCAACCACAA ACGCACACAT TAATACTGGT 
GACGGTGTCG GTATGGCAAT GCGTGCTGGC GTTCAGATGC AAGATATGGA AATGTGGCAA 
TTCCACCCAA CCGGTATCGC TGGTGCTGGT GTACTTGTGA CTGAAGGTTG TCGTGGTGAA 
GGTGGTTACC TACTAAACAA AGACGGCGAG CGTTTCATGG AGCGTTATGC ACCAAACGCG 
AAGGATTTGG CATCTCGTGA CGTGGTTGCA CGTTCTATGA TGACCGAAAT CCGTGAAGGT 
CGTGGTTTAG ATGGCCCATT AGGCCCACAC TGCTTACTGA AACTCGATCA CTTAGGTAAA 
GAGACCTTAG AAGCCCGTCT ACCAGGCGTG TGTGAATTAT CTCGTACCTT CGCTCACATC 
GATCCGGCCG ATGGTCCAAT CCCAGTATTA CCAACTTGTC ACTATATGAT GGGTGGTCTG 
CCGACTAAGG TGAGTGGTCA GGTTATTCGT AAGAATACTG ATGGTACTGA GCAAGACGTA 
GTCGGTCTGT TTGCTGTTGG TGAGATTGCC TGTGTATCTG TGCACGGTGC TAACCGCTTA 
GGCGGTAACT CATTGCTCGA CCTAGTGGTC TTTGGCCGCG CCGCTGGTCA ACACTTAGGT 
AAAGCGCTCG ATGAGACTGC GGATCCTAAG GATGCCACTG ATGCCGACAT CCAAGCTTCT 
CTGGCACGTT TACAACGCTG GGAAAGCAAT AAAGATGGTG AAGATCCAGT GCAAATCCGT 
AAGGATTTAC AACTTTGCAT GCAATTAAAC TTCTCAGTAT TCCGTCGTGG CGATGCAATG 
GCTGAAGGTT TAGAGCAGTT AAAAGCCATC CGTAAGCGTT TAGAAAATGC TAAGTTGTCT 
GATAACTCTC GCGAGTTTAA CACCCAACGT ATCGAGTGTT TAGAATTGGA CAACCTGATG 
GCGACGGCGA TTGCTACCGC TTATGCTGCT AACTTCCGTA CAGAGAGCCG CGGTGCTCAC 
TCACGTGAAG ATTATTTAGA GCGTGACGAT GAAAACTGGT TATGTCACAG TCTGTTTGAC 
CCAGTGACAG AAACCATGGA CCGTCGTGCT GTGAATATGG CACCTAAGTT GCGTGAAGCC 
TTCCCGCCGA AGAAACGTAC CTACTAG 

 

Protein sequence

MSIPVREFDA VVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA 
HEDHWEQHMY DTVKGSDFIG DQDAIEFMCQ TGPEAIIELE HMGLPFSRFD NGKIYQRPFG 
GQSKNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTQV FSEWYALDLV KNQDGAIVGC 
TAIEIETGEI VYFKAKATVL ATGGAGRIYA STTNAHINTG DGVGMAMRAG VQMQDMEMWQ 
FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG 
RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL 
PTKVSGQVIR KNTDGTEQDV VGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG 
KALDETADPK DATDADIQAS LARLQRWESN KDGEDPVQIR KDLQLCMQLN FSVFRRGDAM 
AEGLEQLKAI RKRLENAKLS DNSREFNTQR IECLELDNLM ATAIATAYAA NFRTESRGAH 
SREDYLERDD ENWLCHSLFD PVTETMDRRA VNMAPKLREA FPPKKRTY