Gene SO_1880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1880 
SymbolnlpB 
ID1169646 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp1975527 
End bp1976624 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content45% 
IMG OID637343770 
Productlipoprotein-34 NlpB 
Protein accessionNP_717488 
Protein GI24373445 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3317] Uncharacterized lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAAAGA AAGTCACCCC ACTGTTCCTA GTTGCTGCCG TTGCTGCTTG TAGTTCGCCA 
TTAGAGCGTC GCCAAGCTAA CGGTGGTGAA GACTATGTAC AGGCTGAGCA AGCGCCAATG 
CTAAAGATCC CTGAGGGATT GAAAACGCCG CCTTACAATA AAGAATACGA CGTGCCCGCG 
TTAGGTCCTA AAGCAAACCC TGCGCTTGTT GGTAAAAACC TTGATATCCG CCCACCATTG 
CAAGTTTTGC CCATGGCAGA AGGCACGCAT GTGGAAGAGG GCAGTGATAA CATTAAGATC 
GTGGTTGAAT CTATTGATAA CAATGTCGAC CTTAAGCAAG AGATTTTCAC GAACTTAGAT 
GACTTCTTCG CGAAACAAGC AATTCCTATC CGTAGTCGCG ACTTTGATAA AGGCAGCATC 
GAAACCGATT GGATTGAAAG CCGTGAGGTG TTGGAGTCAA GTTTATGGGG CTCTGATAAA 
GAATACCTGC TGCGTCAGCG TTATCGCTTC GATGTGGAAA CTCGTCCCCA TGGCCGCACT 
GCCAATATCG TTATTCACTT AGTTGAGCAT GAAGAGTTTT ACGATGGTAA AGAACAAAAA 
GTGATGCTCA GCGGTGAAGA CAAGCAGCGT TATACCATTG ATATGCTTAA CAGTGCCATT 
GCTTATATGA GTGTTAAGCG TGAGCAAACC ATCCAAGCAA ACCGACTGAA GCAGACCTTA 
GGGATCAATG TTGATTTGAT CACGCCAGAA GAAGGGGCTG CATATTGGTC TGCTAAGGCG 
GCCTATAAGC AAGTGTGGGA TCGTCTGCGT ATCGTGTTAC CAGAAATGGG CTTCGAAATT 
TCAGATATGG ACAGCGCCAA AGGCCTGTAC TTTATCAAGT TTACCGATAA CTCTGGTTTC 
TGGAGCTCGT TGTGGAACAA CAATCAATTG TCCTTAAAAG AAGGTAGCTA CCGTTTACTC 
TTAGAAGACG GTGATACCCC TGATGAGACA AAAATTTGGC TTCGTGATGC TGAGGATCAG 
CCATTATCGA ATGACGTTGT CAGCAAAGTA TATGAGTCAT TGTCAAGCCT GATGAAAGAA 
GAACGCAAAC TGCGTTAA
 
Protein sequence
MLKKVTPLFL VAAVAACSSP LERRQANGGE DYVQAEQAPM LKIPEGLKTP PYNKEYDVPA 
LGPKANPALV GKNLDIRPPL QVLPMAEGTH VEEGSDNIKI VVESIDNNVD LKQEIFTNLD 
DFFAKQAIPI RSRDFDKGSI ETDWIESREV LESSLWGSDK EYLLRQRYRF DVETRPHGRT 
ANIVIHLVEH EEFYDGKEQK VMLSGEDKQR YTIDMLNSAI AYMSVKREQT IQANRLKQTL 
GINVDLITPE EGAAYWSAKA AYKQVWDRLR IVLPEMGFEI SDMDSAKGLY FIKFTDNSGF 
WSSLWNNNQL SLKEGSYRLL LEDGDTPDET KIWLRDAEDQ PLSNDVVSKV YESLSSLMKE 
ERKLR