Gene SO_1802 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1802 
SymbolsapD 
ID1169575 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp1891945 
End bp1892952 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content51% 
IMG OID637343689 
Productpeptide ABC transporter, ATP-binding protein 
Protein accessionNP_717410 
Protein GI24373367 
COG category[V] Defense mechanisms 
COG ID[COG4170] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCATTAC TCGACGTTAG AAACCTGACC ATTGAACTCG ACACGCCCCA CGGCAAAGTG 
CGGGCCCTTG AGAAAGTGAG CTTGACCCTC AATGCTGGTG AAATCCACGG CTTAGTTGGG 
GAATCAGGCT CAGGCCGCAG TCTGCTTGCC AGAGCCATTC TAGGGATCCC AGGCCCCAAC 
TGGACCATTA CGGCCGACCG CATGATGTGG GATGGTAATA ATCTGATGGC CATGAGTTCA 
AAGGAGCGCC GTAATCTGAT GGGCTCGGAT ATGGCGATGA TCTTCCAAGA CCCTTCAGGC 
AGCCTTGATC CTTCGCAAAC TGTAGGCAGT CAGCTTATGC AAGCGATGCC GAAAAATCCT 
AAGGCCTATT TTTGGCAAAA GCATAAACAT GCCAAGCTCA CGGCGCAAAA GTGGCTTCAC 
AAGGTCGGCA TTAAAAATCC GCAAAAAGTC ATGTCCAGCT ACGCTTGGGA GTTGTCAGAG 
GGCGAATGTC AAAAAGTGAT GATCGCCATG GCGATTGCCA ACCAGCCAAG ATTATTGATT 
GCTGACGAGC CGACAAACTC GATGGAGCTG AGCACTCAAG CACAAATTTT CCGCCTATTG 
TCGCAGCTCA ACCAACTACA AAACGTGTCG ATTTTAATCA TCAGTCACGA GCTTGAAACG 
CTGGCCCAAT GGTGCGATCA CTTATCCGTG CTCTATTGCG GCCAAGTGAT GGAGTCAGGC 
CCAACGGATG AACTGATTAA TCAGCCCTAT CATCCCTACA CTAAGGCGCT ATTGGATAAT 
ATGCCGGATT ACTCAGGGAT AGAGGCACAC AAGGCGATTA TGCCAACGCT GCCAGGATCG 
GCACCCGCTT TGCAACATCT GCCCATTGGC TGTCGCTTGG GGCCAAGATG CCCTGAAGCA 
CAAAAGAAAT GTGTTAATCA GCCAAGTTTA AGTCATTCGA GAGACCGCTA CTTTGCCTGC 
CATTTCCCTT ACCACGGTGA AACGACAAAT GACGACCCCA CTGCTTAA
 
Protein sequence
MPLLDVRNLT IELDTPHGKV RALEKVSLTL NAGEIHGLVG ESGSGRSLLA RAILGIPGPN 
WTITADRMMW DGNNLMAMSS KERRNLMGSD MAMIFQDPSG SLDPSQTVGS QLMQAMPKNP 
KAYFWQKHKH AKLTAQKWLH KVGIKNPQKV MSSYAWELSE GECQKVMIAM AIANQPRLLI 
ADEPTNSMEL STQAQIFRLL SQLNQLQNVS ILIISHELET LAQWCDHLSV LYCGQVMESG 
PTDELINQPY HPYTKALLDN MPDYSGIEAH KAIMPTLPGS APALQHLPIG CRLGPRCPEA 
QKKCVNQPSL SHSRDRYFAC HFPYHGETTN DDPTA