Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1644 |
Symbol | dnaE |
ID | 1169438 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 1726307 |
End bp | 1729783 |
Gene Length | 3477 bp |
Protein Length | 1158 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637343552 |
Product | DNA polymerase III subunit alpha |
Protein accession | NP_717255 |
Protein GI | 24373212 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGATC CTCGTTTTGT GCATCTGCGT GTCCACAGTG ACTTTTCCAT GTCTGATGGT GTGGCTAAGG TCAAGCCGAT CCTCGCTCAA GTTGAAGCGA AAGGAATGGC GGCGGTGGCT TTGACGGATC AAAACAACCT CTGTGGTTTA GTCAAGTTTT ACGGCGGTTG CCACGGTGCG GGGATCAAGC CGATTATTGG CGCGGACTTT TGGATGCAAG TGCCAGGCTT TGAGGATGAA TTTTGTGCTG TCACCATTAT CGCAATGGAT AATGAAGGCT ATCAAAATCT CACTCAAATC ATCAGCCAAG CCTATTTACG TGGTCAAGTT CAAGGGCGTG TAGTGATTGA CCAAGAGTGG TTGATCACTT ACAACCCTGG CATTTTGCTA CTGTCTGGCG GCAAAGAAGG GGACATAGGT AAAGCGCTGC TAAAAGGCAA CAATACCCAA GTCGAGTCGT TATGCGAGTT TTATCAGCAG CATTTTGAGG GGCGTTATTT CCTCGAATTA TTGCGTACAG GGCGCCCCGA TGAGGAACGT TACCTGCATA TGGCGGTGGG AGTAGCGCAG GAAAAGGGCA TTCCGGTGGT AGCCACCAAT CAGGTGGTGT TTTTAAAGCC TGAGGACTTT GAGGCACATG AAATCCGGGT CGCGATTCAT GATGGTTTTA CGCTTGCCGA TCCGCGCCGT CCTAAAAAGT ACAGTGAGCA GCAGTACCTT CGCAGTGAAG ATGAAATGTG CGAACTGTTT GCCGATATTC CCGCAGCCCT TGCCAATACG GTTGAAATTG CTAAACGCTG TAACGTCACC ATCCGTTTAA ACGAATACTT TTTACCCAAT TTTCCTACCG GCGACATGTC AATTGAAGAT TTTCTGGTTG ATTGCTCGAA AAAAGGGCTT GAAGAACGTT TAGCATTTTT ATTCCCCGAT CCACAAGTGC GCGCCGAGCG CCGCGGTGAG TACGATGAGC GTCTCGATGT GGAGCTCAAG GTGATTAACC AGATGGGCTT TCCTGGTTAC TTCTTGATCG TGATGGAGTT TATCCAGTGG GGCAAGGATA ATGGTATTCC TGTCGGCCCG GGCCGTGGTT CGGGCGCCGG ATCACTTGTG GCCTACGCTC TTAAGATTAC CGACTTAGAC CCACTCGAAT TCGACCTGCT GTTCGAACGT TTCTTGAACC CAGAGCGGGT GTCGATGCCC GACTTCGACG TCGACTTCTG TATGGATAGA CGCGACGAGG TGATTGATCA CGTGGCCGAA CTCTACGGCC GTGAAGCGGT ATCGCAAATT ATCACCTTCG GTACTATGGC GGCAAAAGCG GTTATCCGTG ACGTGGGCCG GGTGCTCGGT CATCCCTACG GCTTTGTGGA TCGTATTTCA AAGCTTATCC CACCAGAGCC TGGGATGACA CTGGCCAAAG CTTTTGAAGT GGAGCCAGCA CTGCAGGAAT CTTACGATGC CGATGAGGAT GTCAAAGATC TTATCGACAT GTGTCGTAAA CTTGAGGGCG TCACCCGAAA CGCGGGTAAA CACGCGGGGG GCGTGGTCAT CGCGCCCACC AAGATCACCG ACTTTTCGCC GCTATACTGC GACGCCGAAG GTAAAAACCC CGTCACTCAG TTTGATAAAA ACGATGTTGA AACCGCAGGG TTAGTGAAGT TCGACTTCCT TGGGCTTAGA ACGCTCACCA TCGTCGATTG GGCGCTGGAA ATGATCAACA AGGTGGAGGT CAAAAATGGC CGTTCACCAA TACGCATTGA AGCCATTCCG CTAGACGATC CTGCTTCGTT CCGATTACTG CAACGTTATG AAACCACCGC GGTATTCCAG CTCGAATCCC GCGGTATGAA GGACTTGATT AAACGCCTGC AGCCCGACTG CTTCGAAGAT ATGATCGCTC TGGTGGCACT TTTCCGCCCA GGGCCTCTGC AATCGGGCAT GGTGGATAAC TTTATCGAGC GTAAGCATGG CCGTGAAGAG GTGTCTTACC CCGATTCCCA ATACCAGCAT GAATCCTTAA AGGAACTACT CTCGCCCACC TACGGCATTA TTTTGTACCA AGAGCAGGTG ATGCAGATTG CACAGGTATT GTCGGGTTAT ACCTTAGGCG GCGCCGACAT GCTGCGCCGT GCTATGGGTA AGAAAAAACC TGAGGAGATG GCCAAGCAGC GGAGTATTTT TAAAGAGGGC GCGATTAAAA ACGGTGTCGA TGGTGAGCTG TCGATGAAAA TCTTCGACCT CGTGGAAAAG TTCGCCGGTT ACGGTTTTAA CAAATCTCAC TCCGCGGCTT ATGCGTTAGT TTCCTATCAA ACCCTGTGGC TGAAGACCCA TTTTCCACCG CAATTTATGG CAGCGGTGAT GTCTGCCGAT ATGGATAACA CCGATAAAAT TGTGACCTTA GTGGATGAGT GTGAGCGGAT GGGGCTCACC ATCATTCCGC CGGATGTGAA TAAGGGATTA TTTAAGTTTA CCGTTGATGA TGATCTGCGG ATTGTCTACG GCATCGGCGC CATCAAGGGC GTGGGTGAGG GGCCAGTTGA GTCGATTTTA GAGGCGCGTA AGGACGGTCC CTTTACAGAT TTATTCGACT TTTGTGCCCG TATTGATCTT AAAAAGCTTA ACAAGCGGGT GATTGAAAAG CTTATTTGCG CCGGCGCCTT AGATGCGCTT GGACCACACC GCGCCTCGAT GATGGCAACC TTGCCTGAGG CGATAAGCGC TGCCGATCAG CACGCTAAGG CCGAGGCGAT TGGCCAGCAT GATATGTTTG GTCTGCTTAA TAGCGATCCC GAGGACAGCA AGCAGCAGTT TGTTGAATGT ACTCCGTGGC CGGATAAAAT TTGGCTCGAA GGTGAGCGCG AAACCTTAGG GTTGTATTTA ACGGGCCATC CCATAAATCA ATACCTTAAA GAGCTTAAGC ATTATACTTC TGGGCGGCTC AAGGATGTGC ATCCCACTGA TCGCGGTAAA ACCGTGAAGG CGGCGGGGTT AGTGGTGGCG ACCCGCGTGA TGCTCACCAA ACGCGGCTCG AAAATGGGCT TGTTGACCTT AGATGACAAG AGCGCTCGGC TCGAGGTGAT GCTATTTACC GAAGCCTTTG AGAAGTTTAA TCACCTGCTT GAAAAGGACC GGATCCTTAT CTGCGAAGGT GAGGTGAGTT TCGATGATTT TGCCGGTGGC AACCGGATGA CGGCGCGCAA TATTATTGAT ATTAGTGAGG CGCGTAGCCA TTTTGCCAGT GCATTGGAGA TTGATTTAGA GGCATCGCAG TTGACTCCGA GTATGCTCGA TAGCATCGAG CAGGCGATAA GTCCATGGCG TAATGGCGCT GTGCCAGTAC TGATTAACTA CAGTCAAGCT CAGGCCAAGG GGCAGTTTAG ATTGGCTGAA GCCTGGCGAG TTAACCCAAG TGATGAGTTG GTCTTTGCCT TGGAAAGTTT ACTTGGCCCC CATAAAGTGC GGATTGTATT TCCATAG
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Protein sequence | MSDPRFVHLR VHSDFSMSDG VAKVKPILAQ VEAKGMAAVA LTDQNNLCGL VKFYGGCHGA GIKPIIGADF WMQVPGFEDE FCAVTIIAMD NEGYQNLTQI ISQAYLRGQV QGRVVIDQEW LITYNPGILL LSGGKEGDIG KALLKGNNTQ VESLCEFYQQ HFEGRYFLEL LRTGRPDEER YLHMAVGVAQ EKGIPVVATN QVVFLKPEDF EAHEIRVAIH DGFTLADPRR PKKYSEQQYL RSEDEMCELF ADIPAALANT VEIAKRCNVT IRLNEYFLPN FPTGDMSIED FLVDCSKKGL EERLAFLFPD PQVRAERRGE YDERLDVELK VINQMGFPGY FLIVMEFIQW GKDNGIPVGP GRGSGAGSLV AYALKITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMDR RDEVIDHVAE LYGREAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRIS KLIPPEPGMT LAKAFEVEPA LQESYDADED VKDLIDMCRK LEGVTRNAGK HAGGVVIAPT KITDFSPLYC DAEGKNPVTQ FDKNDVETAG LVKFDFLGLR TLTIVDWALE MINKVEVKNG RSPIRIEAIP LDDPASFRLL QRYETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIERKHGREE VSYPDSQYQH ESLKELLSPT YGIILYQEQV MQIAQVLSGY TLGGADMLRR AMGKKKPEEM AKQRSIFKEG AIKNGVDGEL SMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKTHFPP QFMAAVMSAD MDNTDKIVTL VDECERMGLT IIPPDVNKGL FKFTVDDDLR IVYGIGAIKG VGEGPVESIL EARKDGPFTD LFDFCARIDL KKLNKRVIEK LICAGALDAL GPHRASMMAT LPEAISAADQ HAKAEAIGQH DMFGLLNSDP EDSKQQFVEC TPWPDKIWLE GERETLGLYL TGHPINQYLK ELKHYTSGRL KDVHPTDRGK TVKAAGLVVA TRVMLTKRGS KMGLLTLDDK SARLEVMLFT EAFEKFNHLL EKDRILICEG EVSFDDFAGG NRMTARNIID ISEARSHFAS ALEIDLEASQ LTPSMLDSIE QAISPWRNGA VPVLINYSQA QAKGQFRLAE AWRVNPSDEL VFALESLLGP HKVRIVFP
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