| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1494 |
|---|
| Symbol | glgB |
|---|
| ID | 1169305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 1560271 |
|---|
| End bp | 1562511 |
|---|
| Gene Length | 2241 bp |
|---|
| Protein Length | 746 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637343425 |
|---|
| Product | glycogen branching enzyme |
|---|
| Protein accession | NP_717111 |
|---|
| Protein GI | 24373068 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
|---|
| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGACTC AAGCCCAGAC TTACTTCTAT GACGGTAGCG ATGTCGCACT GCTTAATGGT
CAATATACGG ATGTGTTTTC CCTGCTTGGC ATGCACAGCA TCAACGAAGG TAAGGCCTTG
GTGGTGCGCT GTTTTTTACG TAATGCCCAA AAGGTTGATG TGATAAGCCT TAAGGATGGC
CGTAAAGTGG CGAGCCTTGA GCGCGTCAAT GAGGCTGGAC TCTTTGCGGG CACGCTTGGC
AGGCGAATAA AGCCATTTTT GTATGCACTA CGGGTGACTT ACCCCCTTTG CGAGCTTGAT
ATTATCGACC CCTATCAGTT TGGCTCCCTC CTTAATCGTG AGGATTTATA CCTCTTCGGC
GAGGGTAGTA GCGAGCAGGC CTATCGGTTT TTAGGCGCAA ATTGGCGTCA AGTCGATAAC
GTTGAAGGCG TGCATTTTTG TGTTTGGGCC CCCAATGCTA AACGGGTTTC TGTGGTGGGT
GATTTTAACC ACTGGGACGA TACTCGCCAT GTGATGCGTC AACATGTTGC CAACGGTTTG
TGGGAGATTT TTCTGCCAGG TGTCGTCGAA GGCTCGCACT ATAAGTTTGA TTTGGTTTAT
CAAAATGGCG AGCGTCACGC CAAATCCGAT CCGATGGCGA CTCAAATGGA ATGCGCGCCG
CACAATGCCT CCATAGTGCC GAAAAAACAG CAGCACCAGT GGGCTGATAC GCAATGGATG
GATAAACGCG CGGCCACGGC TTGGCACCGT GCGCCCATGT CTATCTACGA AGTGCAGCTT
GGCTCATGGC GGCGAAAAGG CGAGTTTGGT GAGCAATATT TTGATTATCA AGACTTAATC
GAGCAGTTGA TTCCCTATGT TAAGGAACAA GGTTTTACCC ATATTGAGTT GATGCCGGTG
AGCGAATATC CCTTTGACGG TTCTTGGGGA TATCAACCTG TTGGCTTGTA TGCGCCGACC
TATCGTTTTG GCGATGCTAA TGGCTTTAAA GCATTTATCG ATGCCTGCCA TCAAGCTGAG
ATAGGTGTAT TACTCGATTG GGTAGCGGCG CATTTCCCTA AGGATCCCCA CGGTTTAGTG
CGTTTTGATG GCACTTGTCT TTACGAGCAT GAAGATCCAC GTAAGGGGAC GCATCCCGAC
TGGGACACGC TTATCTACAA CTATGGCCGT GGTGAGGTGC GTAGTTTTCT GCTCAGTAAT
GCCTGCTATT GGTTGCGGGA GTTTCACCTC GATGGCCTAA GGCTTGATGC GGTGTCATCT
ATGTTGTATC TCGATTACAG CCGCGAGCCT GGGCAATGGC TGCCCAATGC CTATGGCGGA
CGGGAGAATT TAGAGGCGAT AGATTTTTTG CAAATGCTGA ATCAGCGTTT GTACCAAGCC
ATCCCCGGTA TTTGCATGAT TGCTGAAGAG TCCACCGCCT TTGCTGGGGT GACTAAACCG
ACGGACAGCT CTGGGCTTGG CTTTGGTTTT AAGTGGAATA TGGGCTGGAT GAACGACAGC
CTAAGCTATT TGGGGCGCGA TCCTATTTAT CGGCAGTATC ACCATAACCA GCTCACCTTT
AGTTTGATGT ATGCCTACTC CGAGCAATTT ATGCTGTCGA TAAGCCATGA TGAAGTGGTG
CACGGCAAGG GTTCTTTGCT GCATAAAATC CCCGGCGATG ATTGGCAAAA GTTCGCTACG
CTCAGAGCCT ATTACGGCTT TATGTGGGGG CATCCGGGTA AAAAATTATT GTTTATGGGC
AGTGAGTTTG CTCAGCGCGA TGAGTGGGAT CACGACCACA GTCTCGATTG GCATTTACTC
GCCTTCGAGC CTCACCAAGG CGTGCAGCGC TGGCTTAGGG ATCTTAACCA GCTTTATCGA
CAATTCCCCG CCTTATCCGT ACTCGACTAT GAGCCACAGG GATTTCGCTG GCTCGATTGC
GATAATGGCC GCGACAGTAT TTTTAGCTTT GTACGCTATG GCGAAGGGAA TGATGTACCG
CTGGTGTTTG TGGTGAATAT GACGCCGACC GTGCATCAAG GTTTTCGCAT TGGCTTACCC
CAAGGCGGAG ATTTCTGCGA ATACCTCAAT AGCGACAGCT ATCTCTACGG CGGCAGTAAT
CAGGGGAATG GCGGCAAAAT TATCGCCCAA GCTTTACCCT GGCAGGGCAT GGCATCGAGC
GCGTTGATCA CTGTGCCGCC CCTTGGCTGC TTAATTCTCG GGCCTGCGAC TGAAAATATC
CTAAGAGAAT CAGCCCTATG A
|
|---|
| Protein sequence | MMTQAQTYFY DGSDVALLNG QYTDVFSLLG MHSINEGKAL VVRCFLRNAQ KVDVISLKDG
RKVASLERVN EAGLFAGTLG RRIKPFLYAL RVTYPLCELD IIDPYQFGSL LNREDLYLFG
EGSSEQAYRF LGANWRQVDN VEGVHFCVWA PNAKRVSVVG DFNHWDDTRH VMRQHVANGL
WEIFLPGVVE GSHYKFDLVY QNGERHAKSD PMATQMECAP HNASIVPKKQ QHQWADTQWM
DKRAATAWHR APMSIYEVQL GSWRRKGEFG EQYFDYQDLI EQLIPYVKEQ GFTHIELMPV
SEYPFDGSWG YQPVGLYAPT YRFGDANGFK AFIDACHQAE IGVLLDWVAA HFPKDPHGLV
RFDGTCLYEH EDPRKGTHPD WDTLIYNYGR GEVRSFLLSN ACYWLREFHL DGLRLDAVSS
MLYLDYSREP GQWLPNAYGG RENLEAIDFL QMLNQRLYQA IPGICMIAEE STAFAGVTKP
TDSSGLGFGF KWNMGWMNDS LSYLGRDPIY RQYHHNQLTF SLMYAYSEQF MLSISHDEVV
HGKGSLLHKI PGDDWQKFAT LRAYYGFMWG HPGKKLLFMG SEFAQRDEWD HDHSLDWHLL
AFEPHQGVQR WLRDLNQLYR QFPALSVLDY EPQGFRWLDC DNGRDSIFSF VRYGEGNDVP
LVFVVNMTPT VHQGFRIGLP QGGDFCEYLN SDSYLYGGSN QGNGGKIIAQ ALPWQGMASS
ALITVPPLGC LILGPATENI LRESAL
|
|---|
| |