| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1255 |
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| Symbol | |
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| ID | 1169077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1304327 |
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| End bp | 1305856 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637343202 |
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| Product | cyclic nucleotide phosphodiesterase, putative |
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| Protein accession | NP_716878 |
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| Protein GI | 24372836 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCATTG TGGGATTTAT CGGTTTAGTA CTGGTTATCA TCCTGAGCGC CGTGTTGTCT
CTTTTACGTG CAAGATCCGA AGCGTTGCGC CAACAGCAGC AATTCTTAGC GCAGCTATGC
CCTCAACTTG AAAGACAAAA AACGGATCGT AGCCCGCTTA ATATTCCTGT GGTGCCGCAA
GAGTGTGAGC CTCTCTATCA TGCCTTAAAT GAGATGTTAG CCGCCTTACC CGCGGGGATG
GGTAAGGATA AGCTCACAGG GTTAATTAAT CGTGTTGGAC TTAAAAGGAC TCTCGCTTCG
TTAATGCCAA TTACTCAAGG CACTTTAGTG CTGATTGATA TTTATCGTTT TCGCTATGTG
AATGATCTTT TGGGGTTTGT GTTTGGTGAT ATTCTGCTAA AACAGTTTGC CGAACGTTTA
ACGAGCTTAA GTCTTAAACC TAAACTGATT GCGCGCCTAA ACGGTGATGA GTTTTTTCTC
TATTATGAGC AAAGTTTGTC TCAGGAGCAG TTACTGCATT TACGCGGGCG TTTACAGGTC
CCCTTTAATA TTAAAGACAC ACCGGTCAGT GTGCGTCTGC AAATTGGTTG CTTACAATTA
GCACAGCACC ATGCCGATGT GAGCAACATG CTCAGAAGGC TTGATTTGGC GCTTAAAAAA
GCCCGCAGTA CTCGGATTGC GATTGCCTGT TACAGTGAAA ATGACGACAT TCGCCAACTG
CGGGAATTGA AGATTATTGA TAGTTTGCCC AATGGCTTAC AACGCAATCA TTTGTACATG
GTGTATCAAC CTAAGCAGGA TGTTTCATCA GAGGGATGTA CCCAGGTTGA GGCACTGATC
CGCTGGGAAC ATGAAGAGTT AGGGGTTATT TCACCTGGGG AGTTTATCCC ACTTGCCGAA
TGTGCGGGCA TGATTGATTT AGTGAGCCAT TGGGCGTTAG AACAAGTCCT ACAGCAACAG
GTAAAATGGC GACTGGCGGG AATTTCTGTT TGTGTCGCAT TGAATTTATC TACTCGCGAT
CTCGATAGTG AAACCTTACC CCATGAACTC GATGCGCGCC TAAAGCATTA TCAGTTACCG
CCAGAATGCT TAATGATTGA AATTACAGAG AGCACTTTGA TGGCGGATTT AAATAAAGCC
GTGGATACCC TAGTGCAAAT CCGCCGCCTT GGAATACATC TCGCTATCGA TGATTTTGGT
ACTGGTCATT CTTCTCTGGC TTATTTGAAA CATTTACCCG CAAACGAAGT GAAGATAGAT
AAAGTGTTTC TTCAGGATCT TAAACCGAAC CAACCCTCAG AATATATCCT TGAGGCCAGC
GTCAATATTG CTAAAAAACT CGGATATGAG GTGACGGTCG AAGGGGTTGA AACCCAAGAG
GTGCGCGATC TGTTAGTCAA GATGGGGGTC GATCGTATTC AAGGTCTATG CTATGCCAAG
CCTATGCGGG CGGTAGAGCT TGAAATGCAC TGGCATCGAC TGTGCCCTGC GCCCAAAATG
CTCAGCGCCA ATTTGGGATC ACATCCCTAA
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| Protein sequence | MIIVGFIGLV LVIILSAVLS LLRARSEALR QQQQFLAQLC PQLERQKTDR SPLNIPVVPQ
ECEPLYHALN EMLAALPAGM GKDKLTGLIN RVGLKRTLAS LMPITQGTLV LIDIYRFRYV
NDLLGFVFGD ILLKQFAERL TSLSLKPKLI ARLNGDEFFL YYEQSLSQEQ LLHLRGRLQV
PFNIKDTPVS VRLQIGCLQL AQHHADVSNM LRRLDLALKK ARSTRIAIAC YSENDDIRQL
RELKIIDSLP NGLQRNHLYM VYQPKQDVSS EGCTQVEALI RWEHEELGVI SPGEFIPLAE
CAGMIDLVSH WALEQVLQQQ VKWRLAGISV CVALNLSTRD LDSETLPHEL DARLKHYQLP
PECLMIEITE STLMADLNKA VDTLVQIRRL GIHLAIDDFG TGHSSLAYLK HLPANEVKID
KVFLQDLKPN QPSEYILEAS VNIAKKLGYE VTVEGVETQE VRDLLVKMGV DRIQGLCYAK
PMRAVELEMH WHRLCPAPKM LSANLGSHP
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