Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1221 |
Symbol | deoD |
ID | 1169047 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 1267398 |
End bp | 1268108 |
Gene Length | 711 bp |
Protein Length | 236 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637343172 |
Product | purine nucleoside phosphorylase |
Protein accession | NP_716844 |
Protein GI | 24372802 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0813] Purine-nucleoside phosphorylase |
TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAACAC CACACATTAA TGCTGTAGAG GGCGCATTCG CTGAGACAGT TTTGTTTCCT GGCGATCCAT TACGTGCAAA ATATATTGCT GAAACATTCT TAGAAAATGT TGAGCAAGTG ACTGATGTTC GCAACATGCT AGGTTTTACC GGTACTTACA AGGGTAAACG TATTTCTGTG ATGGGTTCTG GCATGGGTAT TCCTTCATGC TCAATCTATG CAACTGAATT AATTAAAGAT TATGGCGTTA AAAACCTGAT CCGTGTTGGC ACTTGTGGCG CAATAAGCAC AGACGTTAAA GTGCGCGATG TGATCATCGG TATGGGGGCA TGTACTGATT CGCAAGTAAA CCGTTTACGT TTTAAAGGCC AAGATTTCGC GGCTATCGCG AACTATGAGC TGATGAATGC TGTGATTGAA TCTGCCAAAG TCAAAGGCAC TAAGATCCGT GTGGGTAACG TATTCTCTGC TGATCTGTTC TACACGCCAG ATCCACAAAT GTTTGACGTA ATGGAAAAAA TGGGTGTGCT AGGGGTAGAA ATGGAAGCCG CTGGTTTATA CGGTGTTGCC CATGAGTTCG GTGCTCGCGC ACTGTGTGTG GTAACGGTAT CTGACCATAT CCGTACTGGC GAAAAGACGA CTTCAGAAGA GCGTCAAACC ACGTTCAACG ATATGATCGT GATGACTTTA GACGCTGCGA TTACGCTGTA A
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Protein sequence | MATPHINAVE GAFAETVLFP GDPLRAKYIA ETFLENVEQV TDVRNMLGFT GTYKGKRISV MGSGMGIPSC SIYATELIKD YGVKNLIRVG TCGAISTDVK VRDVIIGMGA CTDSQVNRLR FKGQDFAAIA NYELMNAVIE SAKVKGTKIR VGNVFSADLF YTPDPQMFDV MEKMGVLGVE MEAAGLYGVA HEFGARALCV VTVSDHIRTG EKTTSEERQT TFNDMIVMTL DAAITL
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