| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1218 |
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| Symbol | deoA |
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| ID | 1169045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1264751 |
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| End bp | 1266082 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637343170 |
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| Product | thymidine phosphorylase |
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| Protein accession | NP_716841 |
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| Protein GI | 24372799 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTTCTAG CTCAAGAAAT TATACGTAAG AAACGCAATG GGTTAGTCTT AAGTGCCGAA
GAGATACAGT TCTTCGTTAA GGGCATAACC ACCAATGCAG TGTCGGAAGG ACAGATCGCC
GCATTAGGCA TGGCAGTGTA TTTTAATGAC ATGAATATGG ATGAAAGAAT CGCTTTGACC
ACGGCAATGC GCGATTCTGG CACTGTACTC AATTGGCAAT CACTCAATCT TAATGGCCCT
GTTATCGATA AACACAGCAC TGGTGGTGTC GGTGATGTGA TTAGTCTTAT GCTCGGCCCC
ATGGCGGCTG CTTGTGGTGG CTATGTACCG ATGATTTCGG GTCGTGGCCT CGGTCATACT
GGCGGTACGC TCGATAAGTT TGATGCAATT CCCGGTTACC AAACTGAACC TTCGAGTGAA
TTGTTCCGCA AAGTGGTAAA AGATGTCGGT GTGGCGATTA TTGGGCAAAC TGGTGATCTC
GTCCCCGCCG ATAAACGTTT CTACTCCATC CGTGACAACA CTGCTACCGT CGAATCCATC
TCCCTCATTA CCGCCTCTAT TCTCTCTAAG AAATTAGCTT GTAGTCTCGA TGCATTGGCG
ATGGACGTCA AAGTCGGTAG TGGCGCATTT ATGCCGACTT ACGAAGCCTC TGAAGAGCTT
GCTCGCAGCA TCGCTGCGGT AGCCAATGGC GCTGGCACTA AAACCACAGC TTTACTCACC
GACATGAACC AAGTATTAGC TTCATGTGCG GGTAATGCAC TTGAAGTAAA AGAAGCCATC
GACTTCTTAA CCGGCGCTTA CCGTAATCCT CGTCTTTACG CTGTGACTAT GGGGCTTTGT
GCCGAGATGT TACTCCTAGG TGGCCTAGCT ACCGATGAAG CGGATGCCCG TGCCAAGTTA
AACCGCGTAT TAGATAACGG CCGCGCTGCC GAGATCTTCG GCAAGATGGT TTCTGGCCTC
GGCGGTCCCG TTGATTTTGT CGAAAATTAC AGTAAGTACT TACCGCAATC GCAAATTATT
CGTCCGGTAT TTGCCGATAC TCAAGGTTAT GCTCACAGCA TGGATACCCG TGAGCTTGGT
TTAGCCGTGG TGACCTTAGG TGGCGGCCGC CGTAAACCTG GTGATGAGCT AGACTACAGT
GTTGGTCTGA CTCAAGTGTG TGCCCTAGGT GATAAGATTG ATGCTTCTAC ACCGATTGCA
GTGATCCACG CGCAATCCGA AGAAGCCTTT GCGCAGGCCG AAGACGCGGT GAAAAAAGCG
ATTCATATTG ATGAAATCGC TCCAGAAAAA ACACCTGAGA TCTATGCTTA TATTCGAGCA
ACGGATCTTT AA
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| Protein sequence | MFLAQEIIRK KRNGLVLSAE EIQFFVKGIT TNAVSEGQIA ALGMAVYFND MNMDERIALT
TAMRDSGTVL NWQSLNLNGP VIDKHSTGGV GDVISLMLGP MAAACGGYVP MISGRGLGHT
GGTLDKFDAI PGYQTEPSSE LFRKVVKDVG VAIIGQTGDL VPADKRFYSI RDNTATVESI
SLITASILSK KLACSLDALA MDVKVGSGAF MPTYEASEEL ARSIAAVANG AGTKTTALLT
DMNQVLASCA GNALEVKEAI DFLTGAYRNP RLYAVTMGLC AEMLLLGGLA TDEADARAKL
NRVLDNGRAA EIFGKMVSGL GGPVDFVENY SKYLPQSQII RPVFADTQGY AHSMDTRELG
LAVVTLGGGR RKPGDELDYS VGLTQVCALG DKIDASTPIA VIHAQSEEAF AQAEDAVKKA
IHIDEIAPEK TPEIYAYIRA TDL
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