Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1166 |
Symbol | |
ID | 1168995 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 1208522 |
End bp | 1209586 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637343113 |
Product | membrane-bound lytic transglycosylase, putative |
Protein accession | NP_716791 |
Protein GI | 24372749 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
TIGRFAM ID | [TIGR02282] lytic murein transglycosylase B |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTATTC TCCGAGCTTA TTTAGCTCCA TTGGCAGTGC TTTGCCTCAG TTCATACCTT ATTGGCTGTT CAACGGCTAA CGATCCCGTT AACACTACGC AGCCAATAAG TGTCGCCGTG ACAACGCCAG CACCAACGCC CGTGTTACCC GAAGCCTTAA AGGCTGAGTT TATTAAAACG CAAATGGCAC AAGGCTTTAC GAAGGCAGAA GTCGAAACCT TTCTTGCCAA AGCCAAATAC AATCAAGCGG TAATTGATGC GATTTCTCGC CCTTGGGAAG CCAAACCTTG GCATAAGTAT TACCCGATTT TCTTAACCGA AAAACGTCTC GACGCGGGGC TGGCCTTCTG GAAAAAACAC GAAAAAGCAA TCGCTAAAGC CGCGTCAAAT TACCAAGTTG AGCCGCAAAT TATTGTCGCC ATTATCGGTA TTGAAACTTT TTATGGGCAA TACACAGGTA ATTACCCAGT TATTGATGCA CTCTATACCT TAGGGTTTTA TTACGAGCCG AGAGCCACCT TTTTCCGCAA GGAATTTGGC GAGTTAATGA AACTGGTTAA AGAGGAACAT TTAGATATCG ATAGCCTCAA AGGCTCCTAC GCTGGCGCAA TGGGTTTCGG GCAGTTTATT CCTTCAAGCT ACCGCCACTA TGCCGTAGAT TTTGATGGCA GCGGTAATCG TGATTTACTC AAAAGCCCTG ATGATGCCAT TGGCAGTGTT GCCAATTACT TCCATGAACA TGGTTGGCAA TTGAATGCAC CGGTAGCCTT ACCTTTAGTC AATCGCAGTG CCAATGCACC TAAGGCTAAA GTGTGGGCAG GTGAAAAGTT GCATTACAAG GTCTCAGATA TCCTCTCACC GACTTTATCA CTGACCAATG CTAGAGATGT GGATGCCTCA CAAAAAGCCA TGCTTATCGA ACTTGAACAA GTGGGTAGCA AAGATTACTG GCTAGGGTTA AATAACTTTT ATGTGATCAC CCGTTACAAT CGTAGTCCTT TGTATTCAAT GGCTGTATAT CAATTTAGCC AACAACTGAA GCAACAACAT GACGCTAAAA AATAA
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Protein sequence | MPILRAYLAP LAVLCLSSYL IGCSTANDPV NTTQPISVAV TTPAPTPVLP EALKAEFIKT QMAQGFTKAE VETFLAKAKY NQAVIDAISR PWEAKPWHKY YPIFLTEKRL DAGLAFWKKH EKAIAKAASN YQVEPQIIVA IIGIETFYGQ YTGNYPVIDA LYTLGFYYEP RATFFRKEFG ELMKLVKEEH LDIDSLKGSY AGAMGFGQFI PSSYRHYAVD FDGSGNRDLL KSPDDAIGSV ANYFHEHGWQ LNAPVALPLV NRSANAPKAK VWAGEKLHYK VSDILSPTLS LTNARDVDAS QKAMLIELEQ VGSKDYWLGL NNFYVITRYN RSPLYSMAVY QFSQQLKQQH DAKK
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