Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_1150 |
Symbol | rpiA |
ID | 1168979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 1194143 |
End bp | 1194802 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637343096 |
Product | ribose-5-phosphate isomerase A |
Protein accession | NP_716775 |
Protein GI | 24372733 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0120] Ribose 5-phosphate isomerase |
TIGRFAM ID | [TIGR00021] ribose 5-phosphate isomerase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTCAAG ATGAAATGAA AAAAGCTGCG GGCTGGGCTG CACTCAAATA CGTTGAGAAG GACAGCATTG TGGGTGTGGG CACAGGCTCA ACCGTTAACC ACTTTATCGA TGCTTTGGCG ACCATGAAGG CTGATATTGA AGGCGCAGTA TCAAGCTCTG AAGCTTCAAC GCAAAAAATG AAGGCCCTTG GCATCCCGGT TTATGACTTA AACAGCGTCG ATAAATTATC TGTCTATGTC GATGGTGCCG ATGAAATCAA CGGCCACATG GACATGATCA AAGGTGGTGG CGCGGCATTA ACCCGCGAAA AAATCGTTGC AGCTGTGGCT GAAAAGTTTG TCTGTATCGT GGATAACACT AAGCAAGTAG ATATCTTGGG TGAATTTCCA CTGCCCGTTG AAGTGATCCC GATGGCGCGC TCTTACGTGG CTCGCCAACT GGTAAAACTG GGTGGTGATC CTGTTTACCG CGAAGGCGTT ATCACTGATA ACGGTAATGT GATCCTCGAT GTTTACAATC TTAAGATCCT CAATCCGAAA GAATTAGAAG ATAAGATCAA TGCCATTGTG GGTGTGGTCA CTAATGGTCT GTTCGCAAAA CGCGGCGCCG ATGTGTTACT GGTTGGTACC CCTGAAGGCG TTAAAACCTT TACCGCTTGA
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Protein sequence | MTQDEMKKAA GWAALKYVEK DSIVGVGTGS TVNHFIDALA TMKADIEGAV SSSEASTQKM KALGIPVYDL NSVDKLSVYV DGADEINGHM DMIKGGGAAL TREKIVAAVA EKFVCIVDNT KQVDILGEFP LPVEVIPMAR SYVARQLVKL GGDPVYREGV ITDNGNVILD VYNLKILNPK ELEDKINAIV GVVTNGLFAK RGADVLLVGT PEGVKTFTA
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