Gene SO_1060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1060 
Symbol 
ID1168897 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp1100205 
End bp1100798 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content43% 
IMG OID637343016 
Producthypothetical protein 
Protein accessionNP_716687 
Protein GI24372645 
COG category[R] General function prediction only 
COG ID[COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) 
TIGRFAM ID[TIGR02722] uncharacterized proteobacterial lipoprotein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACAAT TTAAACTGAT TTTTGTGCTG GCTGCCGTGA TGGGTCTGGC TGCATGTCAA 
TCGAAAGTCG AGTATGGCGA TGCCACTGAA GTTGAAACCG TTAACGAAAA CTTTGGTTCA 
ACGGATCTGC AAGCCATTGC CGCTAAGATG GTCGATAGCA TGATGACATT CCCGCCTATC 
GTAGCGATAA CAGCGAATAA CCGCCCAATC TTGTTTGTTG ATAGCATCAA AAACAAAACC 
TCAGAGCATA TTGATACTGA GTCAGTGACC GACTCGATCA GCAATAAGTT ACTGCGTTCT 
GGCAAGTTCC GTTTTATCGA TATGACTAAA GTCGATTCAG TACGTAAGCA ACTGGATTAT 
CAAAATAATA CTGGTATGGT TGACCCATCA ACCGCAATCA AATTTGGCCG CCAAATCGGT 
GCTCAATACA TGCTCTATGG CAACCTATCA AGCATTGTGA AGCAAGATGG CAGCACCAAA 
GACGTTTACT ACAAGATGAC AATGCGCCTG ATGGATTTAG AAACAGGTCT TATCGAATGG 
TCTGACGAAA AAGAAATCCG CAAGACTAAG TCTAAGTCTT TCTTGGGCAT GTAA
 
Protein sequence
MKQFKLIFVL AAVMGLAACQ SKVEYGDATE VETVNENFGS TDLQAIAAKM VDSMMTFPPI 
VAITANNRPI LFVDSIKNKT SEHIDTESVT DSISNKLLRS GKFRFIDMTK VDSVRKQLDY 
QNNTGMVDPS TAIKFGRQIG AQYMLYGNLS SIVKQDGSTK DVYYKMTMRL MDLETGLIEW 
SDEKEIRKTK SKSFLGM