| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1043 |
|---|
| Symbol | |
|---|
| ID | 1168881 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 1081547 |
|---|
| End bp | 1082227 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637343001 |
|---|
| Product | amino acid ABC transporter, permease protein |
|---|
| Protein accession | NP_716671 |
|---|
| Protein GI | 24372629 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGAAG CAATCAATAC TTCGCTGTTT AGCCCCATTG GCGACGACGG CATGATAGGC
ATACTGCTCA TTTTAAATGG CTTGAAAGTC ACTTTGATTG TGACCTTCTT CGCCATGTTA
CTAGGCGCAG TATTAGGCGT GGGCACCACA CTGATGAAGA TGTCATCTAA GTGGTATATC
CGCTTCCCCG CCGAACTCTA TGTGGGCGTG ATCCGCGGCA CGCCTGTGGT GGTGCAGTTA
GTGATCCTTT ACTTCATCGT GCTGGCAGCA TTGGATGTCG ATAAAATCAC CGCTGCCATT
ATCGCCTTTG GCTTAAACAG TGGCGCTTAT ATCTCTGAGA TTATTCGTGC TGGCATTCAA
GCCGTCGATA AAGGCCAAAC CGAAGCCGCG CGCTCGCTTG GTCTGTCACA AGCGATGACA
ATGAAGCTGA TTATTCTGCC GCAGGCGATT AAGAATATTC TGCCCGCATT AGGCAATGAG
TTTATTGTGC TACTCAAGGA AACCGCAGTG ATTGGCTTTA TTGGCGGTGT GGACTTGATG
CGGGCGGGAG AAATTATTCG CAGCCGCACC TTTGAAGACA GTGTTCCACT CTTTACCTGC
GCGCTGATTT ATCTGTTCCT AACCTACAGC TTCACATTTA TGCTGTCGAA ATTCGAAAAG
AGGTTGAAGC AAAGTGATTA A
|
|---|
| Protein sequence | MLEAINTSLF SPIGDDGMIG ILLILNGLKV TLIVTFFAML LGAVLGVGTT LMKMSSKWYI
RFPAELYVGV IRGTPVVVQL VILYFIVLAA LDVDKITAAI IAFGLNSGAY ISEIIRAGIQ
AVDKGQTEAA RSLGLSQAMT MKLIILPQAI KNILPALGNE FIVLLKETAV IGFIGGVDLM
RAGEIIRSRT FEDSVPLFTC ALIYLFLTYS FTFMLSKFEK RLKQSD
|
|---|
| |