Gene SO_1019 details

Gene Information

• Locus tag: SO_1019
• Symbol: nuoCD
• ID: 1168861
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 1057388
• End bp: 1059193
• Gene Length: 1806 bp
• Protein Length: 601 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637342981
• Product: bifunctional NADH:ubiquinone oxidoreductase subunit C/D
• Protein accession: NP_716647
• Protein GI: 24372605
• COG category: [C] Energy production and conversion
• COG ID: [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7; [COG0852] NADH:ubiquinone oxidoreductase 27 kD subunit
• TIGRFAM ID: [TIGR01961] NADH (or F420H2) dehydrogenase, subunit C; [TIGR01962] NADH dehydrogenase I, D subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACTGA CTCGTGATTT TCCACACAAT GACACTATGG CCCAGTGGCA ACCCAGTGAC 
CACAAGGATG CCAAGGTCGT TGGCGAACTG TTTGCCCACT TCGGGGCCGA GCACTTCACC 
GTGCAGACCA CCCGCACCGG CGTGCCGGTG GTCTGGCTCC CCCGCGAGCT GCTGCAAGAT 
GTAGTGGGCT TCCTGCGCAA GCTGCCCGCC CCGTTCGTGA TGCTCTATGA CTTAAGCGCC 
ACCGACGAGC GGCTGCGCAG CCATCGCGAC GGCCTGCCGC AAAGCGACTT CACCGTCTTC 
TATCACCTCA TCTCCATCGA CCGTAACGCC GATGTGATGT TGAAAGTAGC ACTAGCTGAG 
AGTGACCTGC ATCTGCCCAC CATCACCAAC CACTTCCCCA ATGCCAACTG GTATGAACGG 
GAAGTGTGGG ATCTGATGGG CATCACCTTC GATGGCCATC CCCATCTGAC CCGCATCATG 
ATGCCCAAGA GCTGGCAGGG TCACCCGCTG CGCAAGGATT ACCCGGCGCG CGCCACCGAA 
TTTGACCCTT TCATGCTCGA TGCCGCCAAG CAGGACATGG AGCAGGAGAA CCTGCTGTTC 
AAACCCGAAG AGTGGGGGCT TGCCCGCGGT AACGAGAATG AGGACTACAT GTTCTTAAAC 
CTCGGCCCCA ACCACCCCTC TGCCCACGGT GCCTTCCGGC TGGTGCTGCA ACTCGATGGC 
GAAGAGGTCC GCAACTGTGT GCCCGACATC GGCTACCACC ACCGCGGCGC CGAGAAGATG 
GGCGAGCGCC AGTCCTGGCA CAGCTACATC CCCTATACCG ACCGGGTCGA GTATCTGGGC 
GGAGTGATGA ACAACCTGCC CTACGTGCTC GCGGTCGAGA AACTCGCCGG CATTAAGGTG 
CCGCAGCGGG TCGACATGAT CCGGGTGATG ATGGCCGAGC TGTTTCGCAT CCAAAGCCAC 
CTCTTGTTCC TCGGTACCTA TATTCAGGAC GTGGGGGCCA TGACCCCGGT GTTCTTCACC 
TTTACCGACC GCCAGCACAT CTACACCATC ATCGAGGCGA TCACCGGCGC GCGTATGCAC 
CCGGCATGGT TCCGCATCGG CGGTGTGGCC CACGACTTGC CGAAGGGATG GCAGCGACTG 
GTGCAGGATA ACCTGCTGAG CTGGCTGCCA AAACGCTTGA TGGATTATGA AAAGGCCGCG 
ATGCGCAACA GCATCCTTCG CGGGCGCACC ATCGGCGTTG CCGCCTACAC CACCGAGCAA 
GCGCTCGCTT GGGGCACCAC GGGGGCCGGA TTGCGCGCCA CCGGCCTTAA CTTCGACGTG 
CGTAAATGGC GCCCCTATTC GGGCTATGAG CAGTTTGACT TTGAAGTGCC GGTCGGCAGC 
AATGGCGATG CCTACGACAG AGCCACAGTG CGCATCGAAG AAATTCGCCA AAGCATGCGC 
ATCATCGAGC AGTGTATGAA CAACATGCCG GAGGGACCGT TCAAGGCGGA TCATCCGCTC 
ACCACCCCGC CGCCCAAAGA GCGCACGTTG CAGCACATCG AGACCCTGAT CAACCACTTC 
CTGCAAGTGT CATGGGGCCC GGTGATGCCT GCGGCTGAGT CGTTTCAAAT GATCGAAGCG 
ACCAAGGGGA TCAACAGTTA CTACCTGACC AGCGATGGCT CCACCATGAG CTACCGGACC 
CGGATCCGCA CCCCGAGCTT TGCTCACCTG CAACAGATCC CCTCGGTGAT CAAGGGCAGC 
ATGGTGTCGG ACCTCATTGT CTATCTGGGC AGTATCGATT TCGTTATGTC GGATGTGGAC 
CGTTAA 

 

Protein sequence

MKLTRDFPHN DTMAQWQPSD HKDAKVVGEL FAHFGAEHFT VQTTRTGVPV VWLPRELLQD 
VVGFLRKLPA PFVMLYDLSA TDERLRSHRD GLPQSDFTVF YHLISIDRNA DVMLKVALAE 
SDLHLPTITN HFPNANWYER EVWDLMGITF DGHPHLTRIM MPKSWQGHPL RKDYPARATE 
FDPFMLDAAK QDMEQENLLF KPEEWGLARG NENEDYMFLN LGPNHPSAHG AFRLVLQLDG 
EEVRNCVPDI GYHHRGAEKM GERQSWHSYI PYTDRVEYLG GVMNNLPYVL AVEKLAGIKV 
PQRVDMIRVM MAELFRIQSH LLFLGTYIQD VGAMTPVFFT FTDRQHIYTI IEAITGARMH 
PAWFRIGGVA HDLPKGWQRL VQDNLLSWLP KRLMDYEKAA MRNSILRGRT IGVAAYTTEQ 
ALAWGTTGAG LRATGLNFDV RKWRPYSGYE QFDFEVPVGS NGDAYDRATV RIEEIRQSMR 
IIEQCMNNMP EGPFKADHPL TTPPPKERTL QHIETLINHF LQVSWGPVMP AAESFQMIEA 
TKGINSYYLT SDGSTMSYRT RIRTPSFAHL QQIPSVIKGS MVSDLIVYLG SIDFVMSDVD 
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