Gene SO_0930 details

Gene Information

• Locus tag: SO_0930
• Symbol: tkt
• ID: 1168776
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 959616
• End bp: 961610
• Gene Length: 1995 bp
• Protein Length: 664 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637342897
• Product: transketolase
• Protein accession: NP_716559
• Protein GI: 24372517
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0021] Transketolase
• TIGRFAM ID: [TIGR00232] transketolase, bacterial and yeast

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTTCCC GTAAAGTACT CGCCAACGCA ATCCGTGCGT TAAGTATGGA TGCAGTTCAA 
AAAGCAAACT CAGGCCACCC TGGCGCCCCA ATGGGCATGG CAGATATTGC TGAAGTGCTG 
TGGAATGATT TCCTTAAGCA CAACCCGAAC AATCCGAAAT GGGTAGATAG AGATCGCTTT 
ATCCTCTCTA ACGGTCACGG CTCTATGCTG ATCTACTCTT TATTACACCT CACTGGCTAC 
GATCTGCCAA TGGATGAACT GAAGCAATTC CGTCAGTTAC ATTCTAAAAC CCCAGGTCAC 
CCAGAATATG GTTACACCCC AGGTGTTGAA ACCACAACGG GTCCATTAGG TGCGGGGATC 
AGCAACGCTG TGGGTATGGC GATTGCAGAA AAAACCTTAG CGGCACAGTT TAACCGTGAA 
GGTCACGAGA TTGTTGACCA CTACACTTAC TGCTTCCTCG GCGATGGTTG CTTGATGGAA 
GGTATTTCCC ACGAAGCTTG TTCTCTGGCA GGTACCTTAG GCTTAGGCAA ACTGATCGCA 
TTTTGGGATG ACAACGGCAT CTCTATCGAC GGCCATGTTG AAGGCTGGTT TACTGATGAC 
ACGCCAAAAC GTTTCGAATC ATATGGCTGG CACGTAATTG CTAACGTCGA TGGTCACGAC 
AGCGATGCGA TTCGCGCGGC TATTGAAGCG GCAAAAGCCG TGACCGACAA ACCAACCATG 
ATCTGCTGCA AAACCATTAT CGGTTTTGGT TCGCCAAACA AATCTGGCAG CCACGATTGC 
CACGGCGCAC CATTAGGTGA TGCGGAAATC GCCGCTGCCC GTGAATTCTT AGGCTGGCCA 
CATGCGCCAT TCGAAATCCC TGCCGACGTA TACGCAGGTT GGGATGCCAA AGACGCGGGA 
GCTGCCCGTG AAGCCGCATG GAACGACAAG TTTGCCGCTT ATGCTGCTGC TTACCCAGAA 
TTAGCTGCTG AATACGAGCG TCGCGTTCTG AAAGGTGAAT TACCAGCCGA TTTCGAAGCT 
AAAGCCCAAG CCTTTATCCA AGAATGCCAA GCCAAAGGCG AAGGTATTGC GAGCCGTAAA 
GCGTCACAAA ACGCGATTGC AGCTTTCGGT GCGATTCTAC CTGAACTGTT AGGCGGCAGT 
GCTGACTTAG CAGGTTCTAA CCTGACCTTG TGGGCAGGTT CTAAAGGGAT TCAAGATGAT 
CCAGCGGGTA ACTACGTGTA CTACGGTGTG CGTGAGTTTG GTATGAGTGG CATCATGAAC 
GGTGTGTCTC TGCACGGTGG TTTCATCAAC TACGGCGCGA CTTTCATGAT GTTTATGGAA 
TACGCACGTA ACGCTGTACG TATGTCTGCA CTGATGGGTA TTCAAAACAT CTTCGTTTAC 
ACCCATGACT CTATCGGTCA AGGTGAAGAC GGCCAACTCA CCAACCCGTT TGAGCAATTA 
GCTAACTTGC GTATGACGCC AAACATGGCG GTATGGCGCC CCTGTGATGC GGCAGAAACC 
GCAGTTGCGT GGAAAGCAGC AATTGAACGT CGTCATGCTC CTACATCACT GATCTTCAGC 
CGTCAAAACC TGAAGGCTCA AGCACGTACT GCTGAGCAAT TAGCCAATGT GGCAAAAGGC 
GCTTACGTAC TGCAAGATTG TGCAGCTACG CCTGAGTACA TCCTGATCGC TACCGGTAGC 
GAAGTACAAT TAGCGATGGA AGCAGCTGCG ACTCTGACTG AACAAGGCAA GCAAGTGCGT 
GTGGTTTCTA TGCCATCAAA CACTGAGTTT GATAAGCAAG ATGCAGCGTA CAAAGAATCT 
GTACTGCCAA AAGCCGTGAC TAAGCGTATC GCTATTGAAG CGGCCCATAC TGACTTCTGG 
TACAAGTATG TTGGTTTCGA AGGCACGGTT GTGGGCATGA CCACCTTCGG TGAGTCTGCG 
CCAGGCAACG TGCTACTGAA GCACTTCGGT TTCACCGTTG AAAATGTGCT GAACGCTGCA 
AAATCACTAG GCTAA 

 

Protein sequence

MSSRKVLANA IRALSMDAVQ KANSGHPGAP MGMADIAEVL WNDFLKHNPN NPKWVDRDRF 
ILSNGHGSML IYSLLHLTGY DLPMDELKQF RQLHSKTPGH PEYGYTPGVE TTTGPLGAGI 
SNAVGMAIAE KTLAAQFNRE GHEIVDHYTY CFLGDGCLME GISHEACSLA GTLGLGKLIA 
FWDDNGISID GHVEGWFTDD TPKRFESYGW HVIANVDGHD SDAIRAAIEA AKAVTDKPTM 
ICCKTIIGFG SPNKSGSHDC HGAPLGDAEI AAAREFLGWP HAPFEIPADV YAGWDAKDAG 
AAREAAWNDK FAAYAAAYPE LAAEYERRVL KGELPADFEA KAQAFIQECQ AKGEGIASRK 
ASQNAIAAFG AILPELLGGS ADLAGSNLTL WAGSKGIQDD PAGNYVYYGV REFGMSGIMN 
GVSLHGGFIN YGATFMMFME YARNAVRMSA LMGIQNIFVY THDSIGQGED GQLTNPFEQL 
ANLRMTPNMA VWRPCDAAET AVAWKAAIER RHAPTSLIFS RQNLKAQART AEQLANVAKG 
AYVLQDCAAT PEYILIATGS EVQLAMEAAA TLTEQGKQVR VVSMPSNTEF DKQDAAYKES 
VLPKAVTKRI AIEAAHTDFW YKYVGFEGTV VGMTTFGESA PGNVLLKHFG FTVENVLNAA 
KSLG