| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0859 |
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| Symbol | |
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| ID | 1168706 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 882701 |
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| End bp | 887998 |
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| Gene Length | 5298 bp |
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| Protein Length | 1765 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637342829 |
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| Product | sensory box histidine kinase/response regulator |
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| Protein accession | NP_716490 |
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| Protein GI | 24372448 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAAAA GTAAACTTCG TACTTTCCGC AGCAAGATCC TATCCCATAT AGCGCTGCCA
TTGATTTTAA TCATGGCTAC CGTTTATGGG ATTACTTCTT GGTTTAATTA CCTTTCTATT
GAGAAACGGC TTTATGAGAA TCTGGCTCAA GAGTCTTCTC ATTCTGCCTC TCGTTTACAA
TTTTTGCTCG AACATGCTCA GGCGAACACT CAAGGGCTTT CTGATTTTAT TGGCTTGTTA
GCCGATAAGG ATGATATTAA CAATCCTGAA AAACTGAAAA CGGTGCTAAC AAATCGCATC
CAACGTAACC CTGATTTTTT TGGCTCAGCC ATTGCGTTTA AACCCAATAC CTTTCCCAAT
AAAAAACTTT TTTCTCCCTA TGTATACCGA AGTGGGAGCG GTTTTAATTA CTTAGATATT
GGCGCTGATG GGTATGACTA CACCGATGGT AATTGGGATT GGTGGTCAAA AGCCATTAAC
CAAGTGGGGG GCTACTGGTC TAAAGCCTAT TTCGACGAGG GCGCAGGTAA TGTGTTAATG
ATCACTTATG CTGTGCCCTT TGGCGTTCAG CCGGATTATT TTGGGGTCAC AACTGTCGAT
TTAGCCTTAG ATAGATTACC TGAGCAATTG GGTATTGCAC CTAGTCGATT AGTGGTATTG
GATGACCAAG GCAGGCTTAT CTTCCATAGT GATAAAGAAA AGGTCTTGGC AGCATCTTCT
TCTGGATGGT TGGATAAACA GAACATCAAG AATATTGCCT TTGCAACCCT ATTAAATGAT
GGACAGGCTG GGCAAGCTAG TTTTGTTGAT GATAAAGGTA CTGTTTATCT TGCCAGCGTT
GCAGAGGTGG CGAAGCTAAA ATGGCGTGTA GTTGTGATGG TGCCGAAGCA CGAGTTGTTT
GCTTCTCTGC TGGACGATAT CGCCTCTGCA ATCCTCAACT TAAGCTTGTT AACCTTACTG
CTATTACTGA CCTGTTATAT CGCGGCTAAA CGTTTAACCC GTCCACTCGA AGCGCTCGAA
TCCGGTATTT TGGCCTTCGG TCAAGGTAAG GCCCAAGAGT TAACCATCCC TAAAGGCGCC
GTCAGCGAGA TTGTGACCTT AAGCGAAACC TTTAACCAAA TGGCAGCGCT GCTTGCTGAA
CGTGAACAAG CGATTTTAGA TTCCCGCGGT AACCGCTTCG CTCGCCTAAT TGATGGCATG
AGTGATAAGT CCTTCTACTG TTCGCTTGAC CCAGATGGGC AACTTGCACA GGTGAGTGAA
GGGGTTACAA AAGTATTGGG AATACCGCCT GAATTACTTA AGCGCAAATA TCAAAGGCTG
TTTTCGGCTA ACCCCCTTAA CGAGAAAAAC TGGGAATATA CCGATCTCGC GCTCAAAGGG
CAGAATGTGC CTCCCCACCA AATTGAGTTA GTGGATGCCA AAGGGCAAGC GAGGAGGCTG
GATGTTTTTA TGCAGCCTTT AGTGTCAGAC ACTGGCGAAT TAATGTCGGT GGAAATGCTA
TTTACCGATG TGACTGAACA GTTTTCTGCT GCCGCTTGGT CTAACGCTGT GCTTGAGGCC
GCGCCTGAAG CCATGTTGAT TGTTGATCAG AATGGTCAAA TAGTCTTTAG TAATAGCCGC
TGCCAACAGC TCTTTGGTTA TGATGCGAAA GCCATGTTGG CGTTGCAAAT TGAAACCTTG
CTACCTGAAG AATTAAGGCA TCTACATACG GGGGAAAGGC TAGACTTTCT GCGTGAAGGG
CGTGATAGGC CAATGGCAAG TGCGCGCCAT GTGCGCGCAC TTAAATCTGA TGGCGGTGAA
TTCGTTGCCG AAATTGCCTT GAGCATTTTA CCGAGTGATT TTGATGGTCG TCGCCAAGTG
GCTGCTTCGA TTCGTGATAT GACCCAAAAA ATAATGGTTG AACAAAAGAT CCGTGATAGT
GAATTACGTT TTCGAGGTCT TGTCACCAAT ATTCCTGGTG CGGTATACCG TACTCGCATT
GGCGAGGTGT GGGTCATTGA ATATGTTAGC GACAACATTG CGGAGATCAC TGGCTATGCG
GCCAGCCAGT TTATTGAAAA TCGTCAACGG ACGTTTACTT CACTGATATT GGAAGATGAT
CGCGCACTGT GCAACCAGCA TATCGAAAGA GCACTGGCAC AGCAGGAAAC CTTTGAAGTC
GAATATCGTA TCCGTCATCG CGATGGCAGT ATTCGCTGGG TGCACGAAAA GGGTAAGGCT
AGTTATTCTG AAGAAGGGTT ACCTTTGTGG TTCGATGGCA GTATTGACGA CGTTACTGAA
AGTAAATTAG CCATTGATGA GATTGAAGCC TCAAGACAGC AATTAACCAA TATCACTGAA
TCCATCCCTT GTACTGTGTA TCAGTTGCGT TGGGTTTCAC CAACTGATCG CAGCTTTACC
TTCCTATCGG GCGCCGCATT GGCAATGCTT GGGTTACACC GTGAAGAGCT GTTGCGTGAC
TTTAATATTA TTGCTGAGCG GATTTTTGAT GAAGAGCGTC CTGAAGTCAT AAGCGCACTC
GCGGGCAAGA GCGATGATCA ATTGCGATGG ATCCGCGAGT TTCGTTATCG CCATCCTAAT
GGTGGTATTC GGTGGATGGA AGCGGGTGCC AGTGGGCATT ATGCCGATGA CGGATCCATC
ATCTGGAACG GCTATGTGAT GGATGTGACT GAGCGAAAAT CAATTGAAGA AGAGCTTGCA
GTAAGTGAAG CCCACTTCAA GGCGCTATTT GATGGTGCAA CCATTGGTAT CGTCAATGTC
GATATTAAGG GACTTATCCT CGATTGTAAT TACCAATTCT GTGAAGATAT GGGACTTAGC
CGCGATGAAT TACGGAGCAC GCCTATCTTT GACGTGTTGA GTGCGCAGGA TAAAGACGTT
GCAAAAGCAC AATTTAAGGA GCTTGTTGAA GGCAAAATTG ATCATTACCG AGGCGAGAGA
AGTTTTGTTC GCCCCTCTGG TGAGCCTTTA TGGATGACGG TTAACGTTTC AACCTTGTTG
GACAGCCAGA ACCAGTTTGA ATCAGCAGTG GTGAGTATGG TCGATATGAC TGAATTAAAA
CTGCTTTCAG ATGAATTGCT TGTCGCTAAA GACGAGGCAG ATGCAGCCAG TAAAGCCAAG
GGCGACTTCC TCGCGAATAT GTCCCATGAA ATTCGTACGC CGATGAATGC CATTATTGGT
ATGTCGCAGC TTTGTTTACA AACGCAACTC GATAAGAAGC AGAAAAATTA TCTCGAAAAA
ATTGAGCGTG CGTCTCAATC TTTACTGTCA ATTATTAATG ATATTCTTGA TTTTTCTAAG
ATTGAAGCGG GCAAGCTTGA TATCGAAAAT GTGTCTTTCC AACTCGACAC TATGCTTGAA
GACTTAAGCG ATATGTTCTC CGAAAGGGCG GCGCAAAAGC AGATCGAATT GTTGTTTGCT
GTTGCGCCCA ATGTTCCTCG CCATTTATTA GGGGATCCGC TGCGATTGGG GCAAGTGCTG
ATTAACCTGA TGAATAACGC GATCAAATTT ACCGAGCGTG GGGAGGTGCT ACTGTCTCTG
AGCTTGGTCG AGCAGCAAAA CGATGACGTC GTGTTACGTT TTAGTGTGCG GGATAGTGGT
ATTGGGCTAA CTCAAGAGCA ACAATCCAAA CTGTTTAAGT CCTTTACTCA AGCCGACACT
TCTACCACCC GTAAATATGG TGGCACAGGG CTTGGACTTG CCATTTCTAA ACAATTGGTC
GAATTAATGG GCGGCAGCAT TGGCGTCGAA AGCCAACTCG GTCATGGCAG TACTTTCTTT
TTCACCGTTA AATTATGCAT CTCCAGTGGT CAAAAACTTT TTGTAGGACA AGAGCTTGAT
GGTATGTCCA TATTGGTTGC CGATGATAAT GCCACCGCAA GGGACATTAT GCGCACCACG
TTGGAGAGTA TGGGCTTTAA CGTAGATACA GTGCGTTCTG GCGACGAGGC AATTATGCGT
TGTAGCCAGC AAGAATATGC TGTGGCATTG ATTGACTGGA AAATGCCGAA TCTTGACGGG
ATTGAAACTG CAAAACAAAT TAAGCAACAA ACAAAAAATG CCCCGCGGAT CTTGATGGTT
TCAGCCCATG CCAATCAAGA TTTCTTAACT CAAATTGAGC AACTCGGCTT GGCAGGCTAT
ATCAGCAAAC CTATCAGTGC ATCGAGATTA CTTGACGGCA TTATGAATGC CCTTGGTCGC
TCAGGGATTC TTCCCGTTAG GCGCCATCAA GACAATATTG CGCCTGAGTT ATTATTGCCC
CTTAAAGGTA AGCGTATTCT GTTAGTCGAA GATAACGAAA TGAACCTTGA GGTGGCTACT
GAGTTTTTAG AGCAAGTGGG GATTATTTTA TCCATTGCGA CCAACGGTCA AATTGCGTTG
GATAAATTAG CTCAGCAGAG TTTTGATTTG GTGTTGATGG ATTGCCAAAT GCCTGTGATG
GATGGGTATC AGGCGACGAA AGCAATTAGA CAAAGGCCCG AGTTGGCGCA ATTGCCCGTG
ATAGCTATGA CCGCCAATGC TATGGCGGGC GATAAGGAAA TGTGTTTAAG AGCTGGGATG
AATGATCACA TTGCCAAGCC AATTGAGGTC AACTTACTGT ATCAAACCCT ATTGAAATAT
TTAGGCGCCC CAGTACCGTC TCTGGAGAAT GCAGAGTTTG TTGTCAATGA ATCACTTAAC
CCGCTTAATC TTGATGTGGA GTCAGTGGTT AAATGGCCTG AGCACCCAGA GCTTGATATC
GATAGAGGCT TACAGTTAGT GCAAAACTCG AAGCGTCTCT ACCAACGGAT CTTTGATCGT
TTTGCAACCA GTCAACGTAA CGTTGTTGAT CAGATCAACA AGGCACTTGC CAGCAATAAG
CGTGAAGATG CGGTGCGGAT GGCGCATACC CTTAAGGGGC TGGCGGGCAA TCTCAGTTCT
TCAAAGCTTG CGGAGTTGGC GCGGCAACTG GAGCTCCATT TAAGTGAAAA TGCTGACTAC
CAAGTGGAGT TAGACCAAAT CCAAATTTTA GTCGCATCAA TATGTGAAGC GATAGAAAAG
GCCAAACCTC AGTTTGAGGA AACAAGTACG TCAACGGCAG AGCATTTACC GAAAGATGCC
TTGATTGCTG CCTTAAAGCA ATTACGCCAA AGCTTAGAAG ATGCTGATTC AGATGCAGTA
ACGCAAATGG ATGCACTTAA ACCCCAAATG AGTGCTCTGT TATGGCAGCA GCTTAGCCCT
GCGCTAACGA TGATTAACCA ATATCAATTC GATGAAGCCG TCGATTTGAT TGATGAAGTG
CTTGCTAAGT TAACGTAG
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| Protein sequence | MDKSKLRTFR SKILSHIALP LILIMATVYG ITSWFNYLSI EKRLYENLAQ ESSHSASRLQ
FLLEHAQANT QGLSDFIGLL ADKDDINNPE KLKTVLTNRI QRNPDFFGSA IAFKPNTFPN
KKLFSPYVYR SGSGFNYLDI GADGYDYTDG NWDWWSKAIN QVGGYWSKAY FDEGAGNVLM
ITYAVPFGVQ PDYFGVTTVD LALDRLPEQL GIAPSRLVVL DDQGRLIFHS DKEKVLAASS
SGWLDKQNIK NIAFATLLND GQAGQASFVD DKGTVYLASV AEVAKLKWRV VVMVPKHELF
ASLLDDIASA ILNLSLLTLL LLLTCYIAAK RLTRPLEALE SGILAFGQGK AQELTIPKGA
VSEIVTLSET FNQMAALLAE REQAILDSRG NRFARLIDGM SDKSFYCSLD PDGQLAQVSE
GVTKVLGIPP ELLKRKYQRL FSANPLNEKN WEYTDLALKG QNVPPHQIEL VDAKGQARRL
DVFMQPLVSD TGELMSVEML FTDVTEQFSA AAWSNAVLEA APEAMLIVDQ NGQIVFSNSR
CQQLFGYDAK AMLALQIETL LPEELRHLHT GERLDFLREG RDRPMASARH VRALKSDGGE
FVAEIALSIL PSDFDGRRQV AASIRDMTQK IMVEQKIRDS ELRFRGLVTN IPGAVYRTRI
GEVWVIEYVS DNIAEITGYA ASQFIENRQR TFTSLILEDD RALCNQHIER ALAQQETFEV
EYRIRHRDGS IRWVHEKGKA SYSEEGLPLW FDGSIDDVTE SKLAIDEIEA SRQQLTNITE
SIPCTVYQLR WVSPTDRSFT FLSGAALAML GLHREELLRD FNIIAERIFD EERPEVISAL
AGKSDDQLRW IREFRYRHPN GGIRWMEAGA SGHYADDGSI IWNGYVMDVT ERKSIEEELA
VSEAHFKALF DGATIGIVNV DIKGLILDCN YQFCEDMGLS RDELRSTPIF DVLSAQDKDV
AKAQFKELVE GKIDHYRGER SFVRPSGEPL WMTVNVSTLL DSQNQFESAV VSMVDMTELK
LLSDELLVAK DEADAASKAK GDFLANMSHE IRTPMNAIIG MSQLCLQTQL DKKQKNYLEK
IERASQSLLS IINDILDFSK IEAGKLDIEN VSFQLDTMLE DLSDMFSERA AQKQIELLFA
VAPNVPRHLL GDPLRLGQVL INLMNNAIKF TERGEVLLSL SLVEQQNDDV VLRFSVRDSG
IGLTQEQQSK LFKSFTQADT STTRKYGGTG LGLAISKQLV ELMGGSIGVE SQLGHGSTFF
FTVKLCISSG QKLFVGQELD GMSILVADDN ATARDIMRTT LESMGFNVDT VRSGDEAIMR
CSQQEYAVAL IDWKMPNLDG IETAKQIKQQ TKNAPRILMV SAHANQDFLT QIEQLGLAGY
ISKPISASRL LDGIMNALGR SGILPVRRHQ DNIAPELLLP LKGKRILLVE DNEMNLEVAT
EFLEQVGIIL SIATNGQIAL DKLAQQSFDL VLMDCQMPVM DGYQATKAIR QRPELAQLPV
IAMTANAMAG DKEMCLRAGM NDHIAKPIEV NLLYQTLLKY LGAPVPSLEN AEFVVNESLN
PLNLDVESVV KWPEHPELDI DRGLQLVQNS KRLYQRIFDR FATSQRNVVD QINKALASNK
REDAVRMAHT LKGLAGNLSS SKLAELARQL ELHLSENADY QVELDQIQIL VASICEAIEK
AKPQFEETST STAEHLPKDA LIAALKQLRQ SLEDADSDAV TQMDALKPQM SALLWQQLSP
ALTMINQYQF DEAVDLIDEV LAKLT
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