| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0781 |
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| Symbol | gcvP |
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| ID | 1168636 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 793529 |
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| End bp | 796417 |
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| Gene Length | 2889 bp |
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| Protein Length | 962 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637342759 |
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| Product | glycine dehydrogenase |
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| Protein accession | NP_716412 |
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| Protein GI | 24372370 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
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| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAAGC AAACCCTCAC TCAGTTAGAA CAGCACGATT TATTCTTACG TCGCCATATC
GGCCCGGATA GCAGCCAACA ACAAGAAATG TTGAACTACG TTGGTGCTGA GTCTTTGGAC
GATCTGACCG CGCAAATCGT GCCTGAGTCG ATCCGTTTAA GCCAAGAGTT GAGCATTGGT
GATTCCTGCG GCGAAGCCGA AGGCATTGCT TACATTCGTG GTTTAGCCAA GCAAAACCAA
GTCTTCAAAA GCTACATTGG TATGGGCTAC TACGGTACCC AAGTGCCTAA TGTGATTTTA
CGTAACGTCT TAGAAAATCC AGGTTGGTAC ACGGCGTACA CGCCCTATCA ACCAGAGATC
GCCCAGGGCC GTTTAGAAGC CATTCTAAAC TTCCAACAAG TGTCGATGGA TTTAACCGGT
TTAGATTTAG CCTCTGCTTC ACTGCTGGAC GAAGCGACTG CCGCCGCCGA AGCGATGGCG
CTGGCTAAGC GTGTGTCTAA AGCCAAAAAA GCGAACATCT TCTTCGTAGC TGATGACGTA
TTCCCACAAA CCTTAGACGT CGTAAAAACG CGCGCTGAGT GTTTTGGTTT TGAAGTCGTG
GTAGGTCCTG CATCTGAGGC CGTTAACCAT GAGCTGTTTG GTGCCCTGTT CCAATATTCA
AACCGTTTCG GTCAGATCAC TGACTTCACA GACTTATTCG CCGAATTACG CGCGAAAAAC
GTGATTGTGA CTGTGGCTGC CGACATCATG TCGTTAGTAT TACTGAAATC ACCTGGCTCA
ATGGGCGCAG ATGTGGTCTT TGGTAGTGCG CAGCGTTTTG GTGTGCCGAT GGGCTTTGGT
GGTCCACACG CGGCATTCTT CGTGGCCCGT GACGAGCACA AACGCTCTAT GCCAGGCCGT
ATTATCGGTG TGTCAAAGGA CACCCGTGGT AACCGCGCCC TGCGTATGGC GATGCAAACC
CGCGAGCAGC ATATCCGCCG CGAAAAAGCC AACTCAAACA TTTGTACCGC GCAAATTCTG
TTAGCGAACA TGGCGTCTTT CTACGCCGTA TTCCACGGCC CACAGGGCCT GAAAACCATC
GCATCACGCA TCAACCGCTT TGCTGATATC TTAGCCGCTG GCTTACAAGC TAAAGGCGTG
AGCTTAGTGA ACAATACTTG GTTCGATACC ATCAGCATCA AAGGCTTAGA CGTTGCAGCA
GTCAATGCTC GCGCGCTGGC CGCTGAAATG AACCTGCGTT TCGATGCTGA CGGCATCGTC
GGCGTGAGCT TAGATGAAAC CACAATCCGC ACCGATATCG ACGCCCTGTT CGAGGTGATT
TTAGGTGCTG GCCATGGTTT AGACGTTGCC GCATTAGATG CGCAAATCGT GGCGCAAGGT
AGCCAATCGA TTCCAGCTTC TTTAGTGCGT GAAGATGCGA TTTTAAGCCA CCCAACCTTC
AATCGCTACC AAAGCGAAAC CGAGATGATG CGTTATATCA AGCGTCTCGA AAGCAAAGAC
TTAGCACTGA ACTACTCAAT GATTTCATTG GGTTCATGCA CCATGAAGTT AAACGCTGCG
GTTGAAATGA TCCCAGTCAG CTGGCCAGAA TTTGCCAACA TGCACCCATT CTGCCCGCTA
GATCAAGCCA AGGGTTACAC TCAACTGATT GAAGAACTGT CTTCATGGTT AGTGAATGTC
ACCGGTTACG ATGCCGTGTG TATCCAACCT AACTCTGGCG CACAGGGTGA ATACGCAGGT
CTGCTGGCGA TTCGTAAGTA CCACGAGTCG CGCGGCGAAG CACACAGAAA CATCTGCTTA
ATCCCACAAT CTGCCCACGG TACTAACCCA GCATCGGCGC AATTAGCCGG TATGCAAGTC
GTGGTAACTG CCTGTGATAA GCAAGGTAAC GTCGATTTAG AGGATCTGAA GGCCAAAGCG
GCCGAAGTGG CAGAAAACCT GTCATGTATC ATGATCACTT ACCCATCGAC CCACGGTGTG
TACGAAGAAA CCGTGCGCGA AATCTGCAAC ATTGTGCATC AGCACGGTGG TCAAGTGTAC
TTGGACGGCG CCAACATGAA CGCCCAAGTT GGCTTAACTT CACCAGGCTT TATCGGTGCC
GACGTATCGC ACCTTAACCT GCACAAAACC TTCGCGATTC CACACGGCGG CGGTGGTCCA
GGTATGGGTC CAATCGGCGT GAAAGCTCAC TTAGCGCCGT TCGTCGCTGG TCACGTAGTG
GTGAAACCAG GCCGCGAAAG CGATAACAAC GGTGCAGTAT CGGCCGCGCC ATACGGCAGT
GCTGGCATTC TGCCAATCAG CTGGATGTAC ATTAAGTTGC TCGGTTCAAA GGGTCTTAAA
AAGTCGACTC AAACCGCGCT GTTAAACGCT AACTACGTGA TGAAGAAGCT GTCTGAACAC
TACCCAGTAC TGTTCCGTGG CCGTAACGAT CGCGTCGCGC ACGAATGTAT TATCGACCTG
CGCCCAATCA AAGAAGCCTC TGGCGTGACC GAAATGGATA TCGCTAAGCG TTTGAACGAC
TACGGTTTCC ACGCGCCAAC CATGAGCTTC CCTGTTGCGG GCACGCTGAT GATTGAGCCA
ACTGAATCAG AGTCTAAGGT TGAACTGGAC CGCTTTATCG ACGCTATGGT GTCAATCCGC
GCCGAAATCG CGAAGGTGGA AGCAGGCGAG TGGCCAGCGG ACAACAACCC GCTGCACAAC
GCACCACACA CTATGGCCGA TATTATGGAC AGCGCGTTCG ATTCACGCCC ATACAGCCGT
GAAGTGGCCG TGTTCCCAAG TGCCGCAGTG CGTACTAACA AGTTCTGGCC AACCGTGAAC
CGTATTGATG ATGTTTACGG CGACAGGAAT TTGTTCTGTG CGTGTGTGCC GTTATCAGAC
TACGAGTAG
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| Protein sequence | MTKQTLTQLE QHDLFLRRHI GPDSSQQQEM LNYVGAESLD DLTAQIVPES IRLSQELSIG
DSCGEAEGIA YIRGLAKQNQ VFKSYIGMGY YGTQVPNVIL RNVLENPGWY TAYTPYQPEI
AQGRLEAILN FQQVSMDLTG LDLASASLLD EATAAAEAMA LAKRVSKAKK ANIFFVADDV
FPQTLDVVKT RAECFGFEVV VGPASEAVNH ELFGALFQYS NRFGQITDFT DLFAELRAKN
VIVTVAADIM SLVLLKSPGS MGADVVFGSA QRFGVPMGFG GPHAAFFVAR DEHKRSMPGR
IIGVSKDTRG NRALRMAMQT REQHIRREKA NSNICTAQIL LANMASFYAV FHGPQGLKTI
ASRINRFADI LAAGLQAKGV SLVNNTWFDT ISIKGLDVAA VNARALAAEM NLRFDADGIV
GVSLDETTIR TDIDALFEVI LGAGHGLDVA ALDAQIVAQG SQSIPASLVR EDAILSHPTF
NRYQSETEMM RYIKRLESKD LALNYSMISL GSCTMKLNAA VEMIPVSWPE FANMHPFCPL
DQAKGYTQLI EELSSWLVNV TGYDAVCIQP NSGAQGEYAG LLAIRKYHES RGEAHRNICL
IPQSAHGTNP ASAQLAGMQV VVTACDKQGN VDLEDLKAKA AEVAENLSCI MITYPSTHGV
YEETVREICN IVHQHGGQVY LDGANMNAQV GLTSPGFIGA DVSHLNLHKT FAIPHGGGGP
GMGPIGVKAH LAPFVAGHVV VKPGRESDNN GAVSAAPYGS AGILPISWMY IKLLGSKGLK
KSTQTALLNA NYVMKKLSEH YPVLFRGRND RVAHECIIDL RPIKEASGVT EMDIAKRLND
YGFHAPTMSF PVAGTLMIEP TESESKVELD RFIDAMVSIR AEIAKVEAGE WPADNNPLHN
APHTMADIMD SAFDSRPYSR EVAVFPSAAV RTNKFWPTVN RIDDVYGDRN LFCACVPLSD
YE
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