Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_0545 |
Symbol | |
ID | 1168414 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 567052 |
End bp | 568779 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637342538 |
Product | response regulator |
Protein accession | NP_716181 |
Protein GI | 24372139 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTATATGG ATTTACTACT GATCGATGAT GATGAAGTCG ATAGAACAGC TATTATTCGG GCGCTGCGAC AATCCAAGCT CGCCTTTAAT GTGGTTGAGG CGAATTGTGC TTTTGATGGC TTAAATCTTG CCTTACAGCG TCATTTTGAT GGGATTTTAC TCGACTACCT ATTGCCAGAT GCCAACGGCT TAGAGGTGCT GATCAAACTT AATTCGATGA CTCAGGAACA AACGGTTGTG GTGATGCTGA GCCGTTATGA AGATGAAAAA CTTGCACAGC GTTGTATCGA ATTAGGCGCA CAGGATTTTT TACTTAAGGA TGAAGTTAAC TCAAGAATTC TCAGTCGTTC AATTCGTTAC GCTAAACAGC GAGCTTCTAT GGCGCTTGCC TTGAGGAATA GTCATGAAAA ACTGAAAGAG CTAGCTGAAC ACGATTCTCT CACCAAATTA ATGAATCGAT ATGGTTTTGA GCTGTGCTTA AATCGGGCAA TCGCCAGGGT AAAACGCAGT AATGATTTGT TAGCAGTGAT CTTGCTCGAT CTGGATGATT TTAAAGCAAT TAATGATACT CTTGGTCACC AGACTGGTGA TATTTTGTTA GTGAAGGTCG CATCGAGATT GAGCACAGTG TTGCGGGATG GGGATGTGAT TGCTCGTTTA GGCGGGGATG AATTTGTGGT GTTAGTGACT GACAATGACT ACAAATATTT CCCCATGATA GTGGCTAACC GTCTACTTAA AGCTTTTGAA GAAGTGTTTT GTCTTGGCGA TAACGATGTG ATGATCGGCG CTAGCATCGG AGTGGCTTTT TATAATGAAG CGGCCTCAGA TAGCTCCGAG TTAATGAAAT GTGCCGATAT TGCGATGTAT CGTGCTAAAA AAATGGGACG TAACCAGATC CAGTTTTACT CCGAGGCGCT AGATAAAGAG GTGCGCTATC GCAATCATAT TGAATCTAGT TTGAGAATAG CCTTAAGGCT GAATCAGTTT AAGGTTTATT ATCAAGTACA AGTTGATGCT CAAACACATC AAATGGTGGG GATGGAGGCA CTGATCCGTT GGTTGCATCC AGAGGATGGC TTGATTTCAC CAGACCAATT TCTGCCCATT GCTGAAGAAA TAGGGCTGAT GGAAGAGATT GGTGATTGGG TCTTGTTCGA AACCTGTCGT CAGGCCCAGT ATTGGCTTAA TCAATTAGCG CCAACTGGAC ATAGTTTCAC CATTGCGGTG AATTTATCAG CATCTCAAAT TGGTCATGTC GACTTATATG AGAAAATTGC CCATGTTCTA AAAGTGACAG GGCTAACACC AGGCGCGCTA GAGTTAGAAA TTACCGAAAA CTGTTTAATT GAAGAGCCCC ACGAGCATGC GAAGATCCTC GATAAAATAG CCCAACTTGG AGTGCGATTC GCCTTGGATG ATTTTGGTAC GGGATTTTCA TCTCTTGAAC ACATTAAATT GTTTCCTATC AGTGTGCTAA AAATCGATAA AAGCTTTATC GCTTCCTACG ATAAGGATGA AAAGGACACT CGTTTGCTCA GTGCACTGCT GAACTTTGCC TATGGTTTTA ACGTTACCTC CGTTGCCGAA GGGATTGAAA CTCTTGAACA AGCAGAGTTT TGCACGGTAA GACATTGTAA TCTATTGCAG GGCTACCTCT TTTCTCGCCC CTTAGAGGCA AGTGAGTTTG AGGCAAAATA CATCACGCCG TTACTTTCTA AATTGTGA
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Protein sequence | MYMDLLLIDD DEVDRTAIIR ALRQSKLAFN VVEANCAFDG LNLALQRHFD GILLDYLLPD ANGLEVLIKL NSMTQEQTVV VMLSRYEDEK LAQRCIELGA QDFLLKDEVN SRILSRSIRY AKQRASMALA LRNSHEKLKE LAEHDSLTKL MNRYGFELCL NRAIARVKRS NDLLAVILLD LDDFKAINDT LGHQTGDILL VKVASRLSTV LRDGDVIARL GGDEFVVLVT DNDYKYFPMI VANRLLKAFE EVFCLGDNDV MIGASIGVAF YNEAASDSSE LMKCADIAMY RAKKMGRNQI QFYSEALDKE VRYRNHIESS LRIALRLNQF KVYYQVQVDA QTHQMVGMEA LIRWLHPEDG LISPDQFLPI AEEIGLMEEI GDWVLFETCR QAQYWLNQLA PTGHSFTIAV NLSASQIGHV DLYEKIAHVL KVTGLTPGAL ELEITENCLI EEPHEHAKIL DKIAQLGVRF ALDDFGTGFS SLEHIKLFPI SVLKIDKSFI ASYDKDEKDT RLLSALLNFA YGFNVTSVAE GIETLEQAEF CTVRHCNLLQ GYLFSRPLEA SEFEAKYITP LLSKL
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