Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_0529 |
Symbol | trpI |
ID | 1168399 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 551820 |
End bp | 552704 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637342523 |
Product | trpba operon transcriptional activator |
Protein accession | NP_716165 |
Protein GI | 24372123 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGACATT TAAAAGCATT CTATGTATTT CATATTACAG CCGAGTCCTC GAGTTACAGC CAGGCCGCGG AGAAACTGCA TATCACCCAC GGAGCAGTCA GTAAGCAAAT AAAACTCTTG GAAAACCACT TATCGCAAAT ATTGTTTTAT AAGCAAGGCC GGGGAATGTG CCTCACCCAA GAGGGGGAAT TGCTTAAGCG CTACACAGAT ATTGCCTTTA ACACTTTAGA TAGCGGGGTA AAGCAGCTGA CTCGGGAGAG CCATCATTAC CTTGAGGTCT CCTGCGAACC CACACTTACC ATGCGCTGGT TAATGCCACG GCTAGCCAGT TTTTTCCAGC TAACGGGCAT AGACGTTCGG TTATCGACGG CAGGAGGTCC GGTAAAGCTC GCGGAGTCTG GATTATCTTT GGCCATTCGG CGAGACGATT TTCATATTCC CCCAGAATAC AACAAACACA ACCTAGTGAG TGAGTGGGCT GGCCCAGTGT TTTCGCCTGA ATATTGGTGC CAAATTCAGC AAAACTGGGG GGATATTGTC CTACTTCATA GCGACTCTCG ACCATCAGCA TGGTCCGATT GGTCGCAGCG TTCAGGGCAC AATTTCTCCA CCAACAAATC GAAATCCTTT GAGCATTTCT ATTTCTGCTT GCAGGCAGCG GTTGATGGGC TCGGAGGCGC TATAGGCTCG TATCCCTTGA TTGTTGACGA CCTAACAAGC GGCAGACTTG TCGCGCCATT TGGCTTTATC CCATCAGGGC ATCATTATGT GTTGTTGAGT CATACGGAGA AACTTGTCAA CAATGAATTG TCATTTTTCA ACTGGTTAGA AGATACCCTC TCCTTATGTC AACCCAAAAC CGCTAAGGCC GCAAAGCCTG TGTAA
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Protein sequence | MRHLKAFYVF HITAESSSYS QAAEKLHITH GAVSKQIKLL ENHLSQILFY KQGRGMCLTQ EGELLKRYTD IAFNTLDSGV KQLTRESHHY LEVSCEPTLT MRWLMPRLAS FFQLTGIDVR LSTAGGPVKL AESGLSLAIR RDDFHIPPEY NKHNLVSEWA GPVFSPEYWC QIQQNWGDIV LLHSDSRPSA WSDWSQRSGH NFSTNKSKSF EHFYFCLQAA VDGLGGAIGS YPLIVDDLTS GRLVAPFGFI PSGHHYVLLS HTEKLVNNEL SFFNWLEDTL SLCQPKTAKA AKPV
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