Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_0421 |
Symbol | ampD |
ID | 1168299 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 435462 |
End bp | 436007 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637342423 |
Product | N-acetyl-anhydromuranmyl-L-alanine amidase |
Protein accession | NP_716058 |
Protein GI | 24372016 |
COG category | [V] Defense mechanisms |
COG ID | [COG3023] Negative regulator of beta-lactamase expression |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTTTG AGTTTGGTTG GTTTACTGCG GCGCGGCGTT GTGAGTCGCC ACATTTTAAC CAGCGCCCCT TTGGGGAGAT TAGCCTGTTG GTGATCCACA ATATCAGCCT GCCCGCGGGA TGCTTTGGCT TGCCTTACAT TGATCAATTA TTTCAAGGCT GTTTAGATAC CAACGCGGAT AACAGTTTTG CTGATTTGGC TGGGCTTAAA GTATCAGCGC ATTTTTTAAT TCGCCGTGAT GGTGAATGTG TGCAGTATGT GAGTTGTGAC GATAGAGCTT GGCATGCTGG CGTATCTCGT TATGGCGAAA GGGAAAATTG TAATGACTTT TCCATTGGCA TTGAGCTTGA AGGAACCGAT ACTGAGCCCT ATACTGCCGC CCAATATCAA CAACTTGTTG AATTGACTCA AGCCTTGTTA GCACAATACT CTAGCTTGAG TGCTGAGCGG ATTGTTGGAC ATTGTGATAT TGCGCCAGTG CGAAAGACTG ACCCTGGCCC AAGCTTTGAC TGGGAAAGGT ATTTAACAAA GCTTCGCGAC TTCTAG
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Protein sequence | MSFEFGWFTA ARRCESPHFN QRPFGEISLL VIHNISLPAG CFGLPYIDQL FQGCLDTNAD NSFADLAGLK VSAHFLIRRD GECVQYVSCD DRAWHAGVSR YGERENCNDF SIGIELEGTD TEPYTAAQYQ QLVELTQALL AQYSSLSAER IVGHCDIAPV RKTDPGPSFD WERYLTKLRD F
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