Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_0380 |
Symbol | hsdR-1 |
ID | 1168257 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 391526 |
End bp | 394627 |
Gene Length | 3102 bp |
Protein Length | 1033 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637342382 |
Product | type I restriction-modification system, R subunit |
Protein accession | NP_716018 |
Protein GI | 24371976 |
COG category | [V] Defense mechanisms |
COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCAGG ATGAACTACA TAAGGTCGAG TTACCCGCTA TTGCCCAATT ATCGCTATTA GGTTGGCAGT ACGTTGCGGG AGCTAAACTC ACGCCTGAAT ACCATGAGAG ACCCTATCTA CGGGATGTCG TGCTGGTGGG ACGGCTCGAA GCCGCCATTA AAAGAATTAA CCCTTGGATC AACGATGAAA ACCTGCGCAA GGTTTGCCGT GATATCACCC ATCCAAACTT TGTCGGCTTG ATGGAATACA ATCAGGCCAT CTATCAAACC TTAGTGAATT ACCTTTCAGT AGAGCAAGAC GTTGGTAAAG GGCGTAAAGG CCAAACCGTT AAGTTGATTG ATTTTGATAA CCTTGCAGCC AATGAGTTTA TCTGTACATC ACAGTTTAAA GTGGAAGGCG TAAACCAAAA TATCATCCCT GATATTGTAT GCTTTATTAA TGGCTTACCG CTGGCAGTGA TCGAATGTAA ATCCCCCTAC ATTTCAGCAC CAATAAGCGA AGGGATTAAC CAACTACGCC GATATGCCAA CCTACGCAAT AGCGTCGATG ATGAAGGCGC ACAGCGGCTT TTTTGGTATA ACCAGCTGAT GGTATCGACC TGTCGCGATC AGGCCAAAGT GGGCACAATT AGTTCCAATG CATCCCACTA TGCTGATTGG AAAGATGCCT ATCCCTTTAC CGATACCACA TTAAGCGAAC AAAATTTATC TCAGGCTTTT AGCCGTAATA GCCTCGACGA TATGCAGGTT AACGATAACC CTGCACTGTA CACCGCCACC AGCTCAAACT ACGATGCAAT CACTGCGGTA ACAGCACAAC AACGCTTGAT TGCAGGTATA TTCAGCCCTG CTAGCTTTCT CGATATATTG CAAAACTTCA TTATATTTGA GCCAGTAGAA GGCAAGCTAA TCAAGAAGGT TGCACGTTAC CAGCAATATA GAGCCGTAAA TAAAGTGATT GAGCGGCTTA AAACAGGCCA AGACCGCAAA GAGAAGTCGG GCGTGGTATG GCATACCCAA GGCAGCGGCA AATCACTAAC CATGGTTATG CTTGCTGTTA AAATGCGCCG AGATCCTGTG CTTAAGCAAT ACAAACTTGT GTTTATTACT GATCGTACTC AGTTAGATGA ACAACTATCT AGCACCTTCC GCGCTGCCCA AGGCGAAACA ATTTATAACG CGGGTTCAGT TGCGGAGCTA AAAGCACTGC TGAAAAAAGA CAGCTCAGAT CTTGTGACCG CAATGGTGCA AAAATTCTTA GACCTAGAGA AAGAGCTGAG TACTAACAAT GAAAACGAAG GTTTTATTAA CTTAAACCCA AGTGACAAAA TTATCGTTCT TGCCGATGAA GCCCATAGAA CTCAGTTTGG CGGCCTTGCC ATGACCATTA ACGCTGCCCT ACCTAACGCT CCTAAAATTG GGTTTACAGG CACACCACTA CTAAAAACCC AAAAAATGGA TAAAGCTTTT GGGGGCTATA TTGATGAATA CAAGATCAAT CAAGCGGTGG ATGATGGCGC AACAGTTCGT ATTTTGTATG AAGGCCGCCA AGTAAAGACC GAAGTTGCAG GAGAGTCATT AGACAAACTG TTTGAGGCTT ACTTTGGTAG CTATAGCAAA GAAGAACAGC GGGAGATTAA ACAAAAATAC GGTGTTGAGC GCGCCGTTCG CGAAGCACCT GCCCGCATTC GCTGGGTTTG CATGGACTTA CTTGAACACT ACCGAAAGCA CATACAACCA GACGGTTTTA AAGCCATGAT AGTGGTGGGT AGTCGCCATG CGGCCACCAT ATTTAAAAAG ACCTTAGATG AGTTAGGTGC GCCACCTAGT GAAGTGATTA TCTCGGGTTA TCACAACGAT GAAGCTTATA TTGCTGTTCA TACCGACAAG ACAAAGCAAA AGAAGATTAT CCAAGACTTT ACTAAACCAT TATCGGAAAA CCCTGTCGCA TTCTTAATCG TGAAAGACAT GCTACTGACA GGGTTTGACG CACCGATAGC ACAGGTGATG TACATCGATC GTAAACTACA AGACCATACG CTGATGCAGG CCATTGCTAG AGTGAACCGT ACCTATGCAA AGAAAGAATG CGGCTTTATT GTCGATTACT TTGGACTGTC GAACCACCTT ATCGAAGCGA TGGAAATGTT CAGCAGTGAT GATGTAGAAG GCACGTATCA AAGCCTTAAA GATGAAATTC CCAAGCTAAA AGCTACACAC ACCCTCGCCA TTTCATTTTT TAGACATATC AAGAATAAAG ACGTTGATAG TTATGTACTG GCACTCAAAG AGGAAACTGT TCGAGCACAG TTTGATATGG CATTTAAGCG ATTTGCAAAG CAAATGAACA TCGTTCTGCC CGATGTTGCC GCCGCACCAT TTTTAGCCGA TATGAAACTG TTGGGCAAAG TCCATAATTC CGCGCGAAAC CAGTACCGTG ATGCTGGTTT AGATATGACT GATATCGGCG CTAAAGTCCG TAAGCTGGTG GACGAACATA TTTTAAGTAC AGGCGTTGAT CCCAAAATAC CGCCTATTGA CCTACTTGCC GCAAATTTTA AAGAGAGTAT TCGACCAGAA AAATCGGCTG AATCTAAAGC TTCTGAAATT GAAAGCGCGA TTAAGCACCA TATTACCGTC AAGCTTGAGG AAGATCCCGA GTATTACAAA TCACTCAGCC TAAGACTCAG AGACATTATC GAGAAGACCG CAGGGCAATG GGAACAGCAA TTAGAGCTGT TATTGGCTAT GGTCGACACG ATTGAGATCG ACCGTCGTAG AGCCGCAAAA GATGCAGGAC TTTCCGAAAC CGAGTTTGCC TTCTACAACA TACTTACTGC TGAAGTGACC CAAACAAGCG ACATTGAAGT CATAGACGAG CACCAGTTAA TTGAGATAAA GACAATTACT CAAAACCTTG TCGCAATGTT TGATGAAGCT ACGCAGATAG TCGACTTTTT TAACAAGGGG GATGAGATAA AGCGGTTGAA AAAAGAGATA AAACGCGCCG TTATTGATGC ATCATTTAGT AACGTAGAGT TGATATCTAA CCTGCAAGAT AGATTTATGG AATTGGCAAA ACACAAGTTT AATAAGCAGT GA
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Protein sequence | MDQDELHKVE LPAIAQLSLL GWQYVAGAKL TPEYHERPYL RDVVLVGRLE AAIKRINPWI NDENLRKVCR DITHPNFVGL MEYNQAIYQT LVNYLSVEQD VGKGRKGQTV KLIDFDNLAA NEFICTSQFK VEGVNQNIIP DIVCFINGLP LAVIECKSPY ISAPISEGIN QLRRYANLRN SVDDEGAQRL FWYNQLMVST CRDQAKVGTI SSNASHYADW KDAYPFTDTT LSEQNLSQAF SRNSLDDMQV NDNPALYTAT SSNYDAITAV TAQQRLIAGI FSPASFLDIL QNFIIFEPVE GKLIKKVARY QQYRAVNKVI ERLKTGQDRK EKSGVVWHTQ GSGKSLTMVM LAVKMRRDPV LKQYKLVFIT DRTQLDEQLS STFRAAQGET IYNAGSVAEL KALLKKDSSD LVTAMVQKFL DLEKELSTNN ENEGFINLNP SDKIIVLADE AHRTQFGGLA MTINAALPNA PKIGFTGTPL LKTQKMDKAF GGYIDEYKIN QAVDDGATVR ILYEGRQVKT EVAGESLDKL FEAYFGSYSK EEQREIKQKY GVERAVREAP ARIRWVCMDL LEHYRKHIQP DGFKAMIVVG SRHAATIFKK TLDELGAPPS EVIISGYHND EAYIAVHTDK TKQKKIIQDF TKPLSENPVA FLIVKDMLLT GFDAPIAQVM YIDRKLQDHT LMQAIARVNR TYAKKECGFI VDYFGLSNHL IEAMEMFSSD DVEGTYQSLK DEIPKLKATH TLAISFFRHI KNKDVDSYVL ALKEETVRAQ FDMAFKRFAK QMNIVLPDVA AAPFLADMKL LGKVHNSARN QYRDAGLDMT DIGAKVRKLV DEHILSTGVD PKIPPIDLLA ANFKESIRPE KSAESKASEI ESAIKHHITV KLEEDPEYYK SLSLRLRDII EKTAGQWEQQ LELLLAMVDT IEIDRRRAAK DAGLSETEFA FYNILTAEVT QTSDIEVIDE HQLIEIKTIT QNLVAMFDEA TQIVDFFNKG DEIKRLKKEI KRAVIDASFS NVELISNLQD RFMELAKHKF NKQ
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