| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0345 |
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| Symbol | prpB |
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| ID | 1168222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 351590 |
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| End bp | 352468 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637342349 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | NP_715985 |
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| Protein GI | 24371943 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCCAAA GCGCAGGATT ACGTTTTCGC CAAGCTCTTG CTAACTCAAA ACCCTTACAA
ATCGTTGGCA CCACCAATGC GTATTTCGCC TTAATGGCGG AGCAAACCGG TTTCCAAGCC
CTGTATCTGT CGGGAGCAGG CGTAGCAAAC GCCTCCTACG GTCTACCGGA TTTAGGTATG
ACCTCGATGA ATGACGTGCT GATCGATGCA GGCCGGATCA CCTCAGCAAC TCAACTGCCA
TTGCTGGTCG ATATCGACAC CGGTTGGGGC GGCGCCTTTA ACATCGCCCG TACCATTAAA
GAATTTGAGA AAATCGGTGT TGCCGCTGTG CACATGGAAG ACCAAGTCTC ACAAAAACGT
TGTGGCCACA GACCAAACAA AGCCGTTGTT AGCACTGAAG AAATGGTTGA CCGTATCAAG
GCCGCCGTCG ATGCCCGTAC CGATCCTAAC TTTGTGATCA TGGCGCGTAC CGATGCGGTT
GCCGTTGAAG GTTTAGAAGC GGGTATCGAA CGTGCAAAAG CCTATATCGC CGCTGGCGCC
GACATGATTT TCGCCGAAGC CCTAACTGAA CTTGACCAAT ACCGTCACTT CAAGGCTCAG
GTTAAGGCGC CGATCCTGGC GAACATGACA GAATTTGGCC AAACCCAATT GTTCAACAAA
GAAGAACTCG CGCAAGCGGG CGCCGACATG GTGCTTTACC CACTCGGCAC TTTCCGCGCT
GCCAACCAAG CCGCGCTGAA AGTGATGCAA GCGTTGATGA ATGATGGTCA TCAACGCAAT
GTCTTAGACA CTATGCAGAC CCGTGCGGAT CTGTATAAGT ACTTGGGCTA CCACGCCTTT
GAAGACAAGT TAGACCAATT ATTTAGCCAA GATAAGTAA
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| Protein sequence | MTQSAGLRFR QALANSKPLQ IVGTTNAYFA LMAEQTGFQA LYLSGAGVAN ASYGLPDLGM
TSMNDVLIDA GRITSATQLP LLVDIDTGWG GAFNIARTIK EFEKIGVAAV HMEDQVSQKR
CGHRPNKAVV STEEMVDRIK AAVDARTDPN FVIMARTDAV AVEGLEAGIE RAKAYIAAGA
DMIFAEALTE LDQYRHFKAQ VKAPILANMT EFGQTQLFNK EELAQAGADM VLYPLGTFRA
ANQAALKVMQ ALMNDGHQRN VLDTMQTRAD LYKYLGYHAF EDKLDQLFSQ DK
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