| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0341 |
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| Symbol | |
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| ID | 1168218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 341460 |
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| End bp | 346007 |
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| Gene Length | 4548 bp |
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| Protein Length | 1515 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637342345 |
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| Product | sensory box protein |
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| Protein accession | NP_715981 |
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| Protein GI | 24371939 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGGGAT TTATAGGGGT AGCTTTGAGT CAACCAATCC TTAGACTAAT CTTTAGCGTG
CTCTGCATTA TCAGTTTTTT TACGGTGCCC TCCACAGGCT TGGCATTACC TTTAAATGCG
GCTAACACAC AGCTGAAATT TGAACACATT CGTAGTGAAG ACGGGTTAAA CCAAAATACG
ATTACTAGCC TTTTTATGGA CAGTGCTGGC ATGCTGTGGA TTGGCACTCA GGATGGTCTC
CATAGCTATA ACGGCTATAA CTTCAATCTT TTTATCCACT CACCTAATGA TCCTAAAAGC
ATTTCAGAAA GTTATGTATC GGATATTATC CAGGATGCAG AAGGTTATCT CTGGGTGGGG
AGCTTTAGCC AAGGAATCAA CAGGCTCGAT TTAAAAACCG GCACCTTTAA ACGTTTTGGA
GTAGAGCAAG GCCTCACTGA TCCCAGAGTG ACGAAACTCA ATATTGTCGG CAATACACTG
TGGATTGGTA CTCAAAGTGG GTTATTTTCA TTCTCCACGA GAACGAATCG ACTCACCAAA
GTATCTCTGG GCACTAGCAT TGAACCCTAT ATTACTAGCC TTGCTAACGT AGATAATACC
TATTTACTCG CAGGAACGAA GGGCAGTGGC ACCTTTGCCG TCAGTGCAAA TACAATTACG
CGGCTCAATA TACCGCAGGA TGCCATTGCC TATCAGGTTA AAGCCAATTC AAGTCGCGCA
ATAACTTTAG CCCTCGGCAA TCAACTCTGG CACTATGATC TTGCTACTCA GCAGGGAAAA
GCTCTCTGGC AAGCTGACAA AAATATCCCA TATATCAAGG ATTTTATTCA AACGCCCGAA
GGGCAATTCT GGGTTGTAGG GCCAGAGGCG GGCTTAATCC AGTTAGAACG TGAAGCAGAT
AAATTCGTAG CGACTTATCA TCAATACGAT ATGAAGCGCA CAAACAGTAT CAGCGAAAAC
AATATCTTAA GCCTTCTTGA AGATCCTTTC GGTAACCTGT GGCTTGGCGC AAGTTATTCT
GGGTTGAATA AGATCAACAC TCGACGCCAA TATTTTCAGC ATTTGTTTGA ATATACGAAC
GAATTACCGC TGCAGAGCAA CAATGTCCGC ACCATTTACC GCAGCCAAGA TCAGGCGCTA
TGGATAGGAA CTGAAGGAGC AGGCCTTAAG CGCTTAGCCG TCAATAGCAC GACATTTGAG
CACTACACCT CCTTTTTTGC CAAAGCGTTA GGGCAACAGA CTCAGCACTT AAATTTAATC
CTGCGCTCGA TTGTCCAAGA TAAGCAAGGC ATTCTCTGGT TTGCCAGTAA TTATGGATTA
GGGCGCCTCA CTCCCAACGG TGAGTTTAAC CTGCTTAATG TTGCTGATAG CCGAGACACT
TCAGCAGAAG CTAACTATAT CCGTAGTCTA GAGTTAGATA ATCAAAATAG GCTGTGGGTG
GCGACATCCC ATGCGCTATA CCGAAAATCC AGCGTAAATG ATGAGTTCAC CCCAGTGCCA
CTCACTGGAA TTGAAAATTT CCATCCAATT CAAAACCTGT TGCTGACGCT TAAATCGGAT
AAAAATATCC TATGGATTGG CTCGCTTAAT GGCCTAGTGA AATTGGATAT GCAAACGGGA
CATGGCGAAG TTTTTTATCA TGATCCCCAT GATAAAAATA GCATTATCAA CAATCGCATT
AGAGACATTT TTGTCGCAAG TAATGGTGAT ACCTGGTTTG CTACCCATGG GGGCATTAGC
AGGCTACCAG CTCAAGCCTT ATCCCCTATT TTTAGCGACT ATACCCGCGA GCAAGGCTTG
CCCAGCGATA CGATTTACGC CCTGTTGGAA GATGATGACA ACCACATATG GTTCAGCAGC
AATGCAGGAA TTGGCAAGTT GAATCCTCAT AATGGCAAAA TCATCAATTT CAACGAACAG
GAAGGCCTGC AGGCGCTGGA GTTTAACGGT GGCGTTAAAC TTAAAGACAG TGATGGCGAT
CTTTGGTTTG GCGGGATTAA TGGCATCAAT CGCTTTAACC CTAAAACCTT ACCTAATCAA
AGAAGTGAAG CAAGGGTCGC ACTCACTGCG TATAAAATTG CCGGTCAAAA ACAGACTATC
TTAGATCTCA GCCATCCTCC GCAAATCGTG ATGAACTATG CAGATCAATT AATCAGCTTT
GAAGTGACCT CACTGGATTT CAGCTACCCA GGAAAAAATC GCTTTAGTTA TTTTCTCGAG
GGATTTGATA ACCAATGGCA CGATTTACCC ACAGGTAATG AAATCACCTT TACCAATATC
GATCCAGGCA ACTACCTACT GCACGTGCGT CACTCTCTAG AGTACAACAG CAAAGGTAAC
TATGCGCTTT TGGTCAATTT AACCGTCAAA GCCCCTTTTT ATCGCACCCC ATTTGCCTAT
GCGTTTTATG TCCTATTTAC GCTGGTTTCA ATGGGGTGGG CTTTGAGGTG GCGTAAGCAG
AAACGCTCAC AACAACAAGA GTTTGAAACC AGCATTCGCG CTTCGGAGGA GCGGCTTAAA
CTAGCCCTTT GGGCTTCTGG CGACGGGATG TGGGACTGGA ATATCCAAGA GCAACAAGTG
TATCGAACCA ATACGGATAT TGCGGTTCCG CAATGGAACG GCCACCAGCT GCTGCACGAC
AATGCTCACC CCGAGGATAG GGAAAGATTT AAGTATGAGC TGACCGAACA CTTACAAGGC
CGCTCTCCAT TCTTTGAAGT CGAATACCGT ATTGAGCATT CACCAGGTAA ATGGGTTTGG
ATCCTTGAGC GGGGCAAAGT GGTCGAAACC AATGCACAGG AGCGCCCCAT TCGGATGACG
GGGACGACCC GTAATATTAC CTCGCGCAAG TTGATCGAAA ATGAACTGGT GCTCTCATCC
CAAGTACTCA ACAGCATGAA CGAAGCTGTA GTCGTTGCAG GCTTAGACTA TCGAATTCGC
TCGGTCAATC CGGCCTTTAG CGCTATCACG GGTTATTCTG AGGGGCAAAT CAGCGATAAA
TTCTTAATCC ATCTAGCCTA TAGCAGGCAA CAACGGGATC TGTTTAATAG CATTGAGCAG
CAGTTACTGC GCCATAAACA TTGGGCGGGG GAAATTTGGA TCCGCAATAA GGCTCGCCGG
GCGATTCTCG TTTGGCTCGA GATTAACCAA GTTATCGACG TAAAAGGCGA AACCAGCCAC
TTTGTAGCGG TATTTACCGA TATTACAGAA CGTAAAAAGG CCGAGGAAGA TTTACGCTTT
CTTGCCAGCT TCGATACGCT CACAGGACTA CCTAATCGCA CCCTATTTCA AGACAGGCTT
AACCACGCGA TATCTCAAGC ACATAGGTCG AATAATATTG TCGCCCTGCT GTTTTTAGAT
CTCGATCGTT TTAAGCATAT CAACGACTCC ATGGGACATC ATATTGGCGA TCTGCTGCTT
AAAGCGGTTG CCCACAGACT GCAAAGTGCC GTCCGCGAAG GGGATACGGT TGCCCGCTTA
GGAGGGGATG AATTTACCAT TATTTTGGAA GGTGTGGCAA AAACCAAAGC CGCCACCTTG
ATCTCGGAGA AAGTGCTTAA AGCTTTCCAA GCGCCCTTTT TATTAGATGA TAAATCGCTC
AACATCTCCA CTTCGATAGG TATTAGCCTG TATCCAAATG ATGCAAAAGA TGTAGATTCA
TTGATTAAAT TTGCCGATAC CGCCATGTAC CACGCTAAGG CGCTCGGACG GAATAACTTC
CAGTTTTATA CCAATAAACT CAATGAGATG GCCACTCGCC ATATGCAACT CGAAACCGGA
CTAAAACAAG CCATCTCACA CAATGAGTTA AGCCTTGTAT ACCAACCTAA GTTTTGCCTA
CGCAACGGTT CTCTGACTGG GCTTGAAGCG CTACTGCGCT GGCAGCATTC AGAATTAGGT
CCCATCTCAC CTGCAGAGTT TATTCCACTG GCGGAAGAAA CAGGCATGAT CAATCAAATA
GGCCATTGGG TGATTAACCA ATCTTGCCAG CAGCTGGCTG AATGGAATGA GTTAGGTTTT
AGCGATATCA GTATGGCCGT CAACCTGTCG GCTCGGCAGC TAAAGGCCGA TATTATCTCG
ACCATTGAAG TGGCCCTTGC AGTATCAGGG CTGCCCGCCA AGGCGCTTGA GCTAGAGCTA
ACCGAATCGA TGATCATGGG CAATCCGCAG GAGTCGGTGA ATATTCTATC TAAACTCAAG
GCGCTAGGTT TAACCATCGC AGTGGATGAT TTTGGCACTG GCTACTCGAG CTTGAGTTAC
CTTAAACGTT TCCCTATCGA TACCTTAAAA ATTGACCGCG AGTTTGTGCG CGACATTACC
AACGACCCCG ATGATGCGGC CATTACCAGT GCAATTATCG CCCTCGCCCA TAGTCTGGAG
TTGAATGTGG TGGCAGAAGG GGTTGAAACC CAAGAACAGC TGAACTTCTT AGCGCTGCAA
GGCTGCGATC AGGTGCAGGG CTTCCTGCTG AGTAAACCGC TCAGCGCCCA AGATTGCCAA
ACGCTATTAC AACAACGCAC AAAAGATCGG CAAGATGTAA AAAAATAA
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| Protein sequence | MLGFIGVALS QPILRLIFSV LCIISFFTVP STGLALPLNA ANTQLKFEHI RSEDGLNQNT
ITSLFMDSAG MLWIGTQDGL HSYNGYNFNL FIHSPNDPKS ISESYVSDII QDAEGYLWVG
SFSQGINRLD LKTGTFKRFG VEQGLTDPRV TKLNIVGNTL WIGTQSGLFS FSTRTNRLTK
VSLGTSIEPY ITSLANVDNT YLLAGTKGSG TFAVSANTIT RLNIPQDAIA YQVKANSSRA
ITLALGNQLW HYDLATQQGK ALWQADKNIP YIKDFIQTPE GQFWVVGPEA GLIQLEREAD
KFVATYHQYD MKRTNSISEN NILSLLEDPF GNLWLGASYS GLNKINTRRQ YFQHLFEYTN
ELPLQSNNVR TIYRSQDQAL WIGTEGAGLK RLAVNSTTFE HYTSFFAKAL GQQTQHLNLI
LRSIVQDKQG ILWFASNYGL GRLTPNGEFN LLNVADSRDT SAEANYIRSL ELDNQNRLWV
ATSHALYRKS SVNDEFTPVP LTGIENFHPI QNLLLTLKSD KNILWIGSLN GLVKLDMQTG
HGEVFYHDPH DKNSIINNRI RDIFVASNGD TWFATHGGIS RLPAQALSPI FSDYTREQGL
PSDTIYALLE DDDNHIWFSS NAGIGKLNPH NGKIINFNEQ EGLQALEFNG GVKLKDSDGD
LWFGGINGIN RFNPKTLPNQ RSEARVALTA YKIAGQKQTI LDLSHPPQIV MNYADQLISF
EVTSLDFSYP GKNRFSYFLE GFDNQWHDLP TGNEITFTNI DPGNYLLHVR HSLEYNSKGN
YALLVNLTVK APFYRTPFAY AFYVLFTLVS MGWALRWRKQ KRSQQQEFET SIRASEERLK
LALWASGDGM WDWNIQEQQV YRTNTDIAVP QWNGHQLLHD NAHPEDRERF KYELTEHLQG
RSPFFEVEYR IEHSPGKWVW ILERGKVVET NAQERPIRMT GTTRNITSRK LIENELVLSS
QVLNSMNEAV VVAGLDYRIR SVNPAFSAIT GYSEGQISDK FLIHLAYSRQ QRDLFNSIEQ
QLLRHKHWAG EIWIRNKARR AILVWLEINQ VIDVKGETSH FVAVFTDITE RKKAEEDLRF
LASFDTLTGL PNRTLFQDRL NHAISQAHRS NNIVALLFLD LDRFKHINDS MGHHIGDLLL
KAVAHRLQSA VREGDTVARL GGDEFTIILE GVAKTKAATL ISEKVLKAFQ APFLLDDKSL
NISTSIGISL YPNDAKDVDS LIKFADTAMY HAKALGRNNF QFYTNKLNEM ATRHMQLETG
LKQAISHNEL SLVYQPKFCL RNGSLTGLEA LLRWQHSELG PISPAEFIPL AEETGMINQI
GHWVINQSCQ QLAEWNELGF SDISMAVNLS ARQLKADIIS TIEVALAVSG LPAKALELEL
TESMIMGNPQ ESVNILSKLK ALGLTIAVDD FGTGYSSLSY LKRFPIDTLK IDREFVRDIT
NDPDDAAITS AIIALAHSLE LNVVAEGVET QEQLNFLALQ GCDQVQGFLL SKPLSAQDCQ
TLLQQRTKDR QDVKK
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