| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0280 |
|---|
| Symbol | mrcA |
|---|
| ID | 1168162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 286053 |
|---|
| End bp | 288572 |
|---|
| Gene Length | 2520 bp |
|---|
| Protein Length | 839 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637342289 |
|---|
| Product | penicillin-binding protein 1A |
|---|
| Protein accession | NP_715920 |
|---|
| Protein GI | 24371878 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGTGGT TAAAACGTAT TGTTATAGCT CTATTCAGTC TAGCCCTTTT GGGCGTGGGC
GCCATTGTTG CAGCATACTT TTATGTTTTG CCGGATCTGC CGGATGTTTC GACACTAAAA
AATGTGCAAT TACAAACACC TTTGCGCATT TACAGTAGCG ATGGCAAACT CATCTCTCAG
TTTGGTGAGA AACGACGAAT TCCGCTAAAA CTGGAAGAGG TGCCCAAACC GCTGTTACAA
GCCTTCCTTG CCACCGAAGA TGCGCGCTTT TATGAACATG GCGGTATTGA CCCTGTCGGG
GTGATGCGTG CCGCAACAGT CATGCTTACA ACGGGTGAAA AGAAGCAAGG TGCAAGTACC
ATTACCATGC AGGTAGCGCG TAACTTCTTC TTAACCCGCG ACAAAACCAT TATTCGTAAA
GTGAAGGAAA TTTTTATTTC CTACCATATC GAGCAGTTGT TAACTAAAGA TGAGATTTTA
GAACTTTACG TTAACCGTAT TTATTTAGGC CAAAGAGCCT ATGGTGTTGG CGCTGCCGCT
CAAGTGTATT TTGGCAAAAA CGTCCAAGAT CTAACGCTTT CTGAAATGAG TATGATTGCC
GGTCTGCCAA AGGCACCTTC AACGCTTAAT CCAATTACCT CACCTTCTCG TGCACTCGCA
CGCCGCAACG TGGTGTTAAT GCGGATGAAC GAAGTGGGTT ATATCAGCAA AGCAGAATAC
CAAGCCGCGC TTCAAGAGCC GTTGGTTGCC AAATATCATG GTGCCGAGAT TGATCTCTAC
GCTCCTTATA TTTCTGAAAT GGCGCGGGAT TACATGGTGC AAAAATACGG TGAAGAAGAA
GCCTATACCA ATGGCTATAA CGTCTACACC ACTATTTCAT CCGATCTCCA ACTCTTAGCC
CAGCAAGCGT TACGCAATAA TGTTTATGCC TATGATGAAC GTCATGGCTA TCGCGGTCCT
GCTGCGGCTT TATGGACGGG CGCTAAGCCT GATAATGCGC AAATCCAAGC TGAACTGGCT
AAAGTGACTC CTGTCCAAGA GCTTCAACCT GCGGCCGTAT TAAGCGTTGA GGGCCAACAA
GCGAGTGTAC TAACCGCAAA AGGTGAAACC AAAGTCATCA AATGGGATGG GTTGAAGTGG
GCGCGCAAAT TTATCAATGA TAAACGCCAA GGCGCTGTTC CGAAATCAGC CTCGGAGATA
CTGACCGTAG GTGAGCGCAT TTGGATCCGC GACAATGGTC AGCACTTACA ATTATCGCAA
GTTCCCGAAG TGGCCAGTGC CACTGTGTCA CTCGATCCGG AAAATGGCGC CATCCGAACG
TTAGTCGGCG GTTACAGCTT TAGCCAAAGC CAATACAACC GTGTGACTCA AGCTAAACGT
CAATTAGGTT CGAATATCAA GCCTTTCATC TATGCCGCGG CATTAGAAAA AGGCTTTACC
CTCGCAACCT TAATTAACAA CGCGCCAATT AATAAACCCG ATATAAGCCA AGGTACTGCA
TGGCGTCCGA AGAACTCGCC CGATATTTAT GGCGGCCCAA CTCGTCTACG AGTGGGGTTA
GCGCAATCGA TCAACGTGAT GTCTGTTAGG GCCATGCGCC ACATTGGTTT AGATGCGGCC
ATTGCCGAGC TGACTAAGTT TGGCTTCGAC CCTAATGACT TACCACGTAA CGAGTCATTA
GCACTAGGAT CTCCTTCGGT GACACCACTG CAAGTGGCAA CCGCTTTCAA TGTGTTTGCG
AACGGCGGCT TTTTGGTTGA ACCTTTCTAT ATTGAGCGGG TAGAAGACTC CTTCGGCAAT
GTGATTGAAA AAGCCAATCC GACCTTAGCC TGTAAGTCTA ACAACAGCCA TGTGCAACCT
AGCAGCGATC CAATGAGCTT TGGTGAACCA ACGGCTCAAA CCGATGCAGC TGTTGCCCAT
TGCTTTGAGC AAACTGGTCG TTATGCACCG CAAATTATCT CTGAGCAAAC GGCATTCCTG
ATCACCGAAG CGCTCAAAAG CGTGATCTGG GGTGGTGGTG ATTGGAGCAA AGGTACGGGC
TGGCAAGGTA CGGCTTGGCG GGCGGCTCAA TTAATTAAAC GCCATGATAT TGCAGGTAAA
ACTGGTACAA CCAACGAATC TCGCGATACT TGGTTCAGTG GTTTTGGCCC GACGCTCACC
AGCACTTTCT GGGTCGGATT TGACGATCAT GGTCGCCAAT TAGGTAGAAC CGCTTGGAAC
GCTAATGGTG AAAAGGATCA GATCACCGGG ACCGAGGCTG GTGCAAAGAC GGCGGGGCCT
GGCTGGAACG AATTTATGAA TAACGTGCTG AAAGGCGTTC CTGAAACTAC GGCTATCCCA
CCAGAGGGGA TCGTCTCGGT GCGGATCGAT CTTGCTACAG GTAAGCTCAC CCGTAAAACT
GATTATACCA GCGCATTTGA ATACTTTATA TCGGGCACTG AGCCTAAGGA ATACATCAGT
GAAACCCAAG ATGAAAATAA CCTATTCATC GATGCGCCAG CGGATGATTT GTTCCAATAG
|
|---|
| Protein sequence | MKWLKRIVIA LFSLALLGVG AIVAAYFYVL PDLPDVSTLK NVQLQTPLRI YSSDGKLISQ
FGEKRRIPLK LEEVPKPLLQ AFLATEDARF YEHGGIDPVG VMRAATVMLT TGEKKQGAST
ITMQVARNFF LTRDKTIIRK VKEIFISYHI EQLLTKDEIL ELYVNRIYLG QRAYGVGAAA
QVYFGKNVQD LTLSEMSMIA GLPKAPSTLN PITSPSRALA RRNVVLMRMN EVGYISKAEY
QAALQEPLVA KYHGAEIDLY APYISEMARD YMVQKYGEEE AYTNGYNVYT TISSDLQLLA
QQALRNNVYA YDERHGYRGP AAALWTGAKP DNAQIQAELA KVTPVQELQP AAVLSVEGQQ
ASVLTAKGET KVIKWDGLKW ARKFINDKRQ GAVPKSASEI LTVGERIWIR DNGQHLQLSQ
VPEVASATVS LDPENGAIRT LVGGYSFSQS QYNRVTQAKR QLGSNIKPFI YAAALEKGFT
LATLINNAPI NKPDISQGTA WRPKNSPDIY GGPTRLRVGL AQSINVMSVR AMRHIGLDAA
IAELTKFGFD PNDLPRNESL ALGSPSVTPL QVATAFNVFA NGGFLVEPFY IERVEDSFGN
VIEKANPTLA CKSNNSHVQP SSDPMSFGEP TAQTDAAVAH CFEQTGRYAP QIISEQTAFL
ITEALKSVIW GGGDWSKGTG WQGTAWRAAQ LIKRHDIAGK TGTTNESRDT WFSGFGPTLT
STFWVGFDDH GRQLGRTAWN ANGEKDQITG TEAGAKTAGP GWNEFMNNVL KGVPETTAIP
PEGIVSVRID LATGKLTRKT DYTSAFEYFI SGTEPKEYIS ETQDENNLFI DAPADDLFQ
|
|---|
| |