Gene SO_0256 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_0256 
SymbolrpoA 
ID1168139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp257763 
End bp258752 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content48% 
IMG OID637342263 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionNP_715896 
Protein GI24371854 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGGGTT CTGTTACAGA ATTTCTTAAA CCGCGTCTCG TTGATATCGA GCAGGTTAAC 
TCAACACGTG CCAAGGTTAC TTTGGAACCG CTTGAGCGTG GTTTCGGCCA CACTTTAGGT 
AACGCGTTGC GTCGCATCCT ATTGTCGTCT ATGCCCGGCT GCGCGGTTAC CGAAGTCGAG 
ATTGACGGCG TACTGCACGA ATACAGCAGT AAGGAAGGCG TACAAGAAGA TATCCTTGAA 
ATCTTGCTAA ATCTGAAAGG CTTAGCAGTG ACTATCGAGG GTAAAGACGA GGCTATGCTT 
ACATTAAGCA AGTCCGGCGC AGGCCCTGTC ATCGCAGCAG ATATCACGCA TGATGGTGAT 
GTCACTATCG TGAATCCTGA TCATGTTATC TGTCATTTAA CAGGTAACAA TGATATCAGC 
ATGCGTATTC GCGTTGAGCG TGGTCGTGGT TATGTGCCAG CATCTGCTCG TGCACAGACA 
GAAGACGATG ATCGCCCAAT CGGCCGTTTG CTGGTTGATG CTTCTTTCTC GCCAGTCGCA 
CGTATTGCCT ACAATGTAGA AGCAGCTCGT GTTGAACAGC GTACTGACTT GGATAAACTC 
GTTATCGATA TGACCACTAA CGGTACTATT GATCCTGAGG AAGCTATCCG TCGTTCTGCA 
ACCATCTTAG CTGAACAGCT GGATGCGTTT GTCGAGCTGC GTGACGTGAC TGAGCCAGAA 
ATGAAAGAAG AGAAGCCGGA GTTCGATCCG ATTCTGTTGC GTCCTGTCGA CGATTTAGAG 
CTAACTGTAC GTTCGGCTAA CTGTTTGAAA GCCGAAGCGA TTCATTACAT CGGAGATCTG 
GTACAGCGTA CTGAAGTTGA GTTGCTGAAG ACCCCTAACT TAGGTAAGAA GTCTCTTACT 
GAAATTAAGG ACGTTTTAGC TTCTCGCGGA CTGTCGTTAG GTATGCGTTT GGAAAACTGG 
CCTCCAGCTA GTTTAGCAGA CGACCTATAA
 
Protein sequence
MQGSVTEFLK PRLVDIEQVN STRAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE 
IDGVLHEYSS KEGVQEDILE ILLNLKGLAV TIEGKDEAML TLSKSGAGPV IAADITHDGD 
VTIVNPDHVI CHLTGNNDIS MRIRVERGRG YVPASARAQT EDDDRPIGRL LVDASFSPVA 
RIAYNVEAAR VEQRTDLDKL VIDMTTNGTI DPEEAIRRSA TILAEQLDAF VELRDVTEPE 
MKEEKPEFDP ILLRPVDDLE LTVRSANCLK AEAIHYIGDL VQRTEVELLK TPNLGKKSLT 
EIKDVLASRG LSLGMRLENW PPASLADDL