Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_0225 |
Symbol | rpoC |
ID | 1168108 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 236488 |
End bp | 240705 |
Gene Length | 4218 bp |
Protein Length | 1405 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637342232 |
Product | DNA-directed RNA polymerase subunit beta' |
Protein accession | NP_715865 |
Protein GI | 24371823 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAGACT TATTAAAGTT TCTGAAACAG CAAAGCAAGA CTGAAGAATT TAACGGTATC AAAATTGGTC TGGCATCGCC TGATCTGATC CGTTCTTGGT CTTTTGGTGA AGTTAAGAAG CCAGAAACCA TTAACTACCG TACCTTCAAG CCTGAGCGTG AAGGTTTGTT CTGTGCGCGT ATCTTTGGCC CAGTCAAAGA TTACGAATGT TTGTGCGGTA AGTACAAACG TTTGAAGCAC CGTGGTGTGA TCTGTGAAAA GTGTGGCGTT GAAGTTACCC AGACTAAAGT ACGTCGTGAG CGTATGGGTC ACATTGAACT GGCTAGCCCA GTTGCCCACA TTTGGTTCTT GAAATCACTG CCGTCCCGTA TCGGTTTAAT GCTGGATATG ACGTTGCGTG ATATCGAGCG CGTACTGTAT TTTGAATCAT TTGTCGTGAT CGAGCCTGGC ATGACCAGCC TTGAACGCGG CCAAATGCTG ACAGAAGAAA CCTATCTGGA TGCATTAGAA GAGTACGGTG ACGAATTCGA AGCCAAGATG GGTGCTGAAG CGGTATTAGA ACTGCTACGC GCAATCGATC TCGAAAAAGA AATCGAACAA ATGCGTGAAG AGCTGCCATC AATCAACTCT GAGACTCGTC GTAAGAAAGT GACCAAGCGT CTTAAGTTGA TGGAAGCGTT CCACACTTCT GGCAACAAGC CAGAGTGGAT GATCTTAAAA GTACTGCCTG TGTTACCACC TGACTTACGT CCGCTGGTAC CGCTCGATGG TGGCCGCTTC GCGACGTCAG ATCTGAACGA TCTGTATCGC CGCGTGATCA ACCGTAACAA CCGTTTGAAG CGTCTGTTAG ATTTAGCTGC GCCAGACATT ATCGTACGCA ACGAAAAGCG TATGTTACAA GAGTCTGTTG ATGCGCTATT AGATAACGGT CGTCGTGGTC GTGCTATTAC CGGTTCTAAC AAACGTCCTC TGAAATCTTT GGCCGATATG ATCAAAGGTA AGCAAGGTCG TTTCCGTCAG AACTTGTTAG GTAAGCGTGT TGACTATTCA GGTCGTTCGG TAATTACCGT AGGTCCAACT TTACGTCTGC ACCAATGTGG TCTTCCTAAG AAGATGGCAC TGGAACTGTT CAAGCCATTC ATCTATGGCA AGCTGGAAGG TCGTGGCTTA GCTACTACCA TCAAAGCGGC TAAGAAGATG GTTGAGCGTG AAGTGGCGGA AGTTTGGGAC GTTCTGGATG AAGTGATCCG CGAACATCCA GTGATGCTTA ACCGTGCACC AACACTGCAC AGACTCGGTA TCCAAGCGTT CGAGCCTGTA CTGATTGAAG GTAAAGCCAT CCAGTTACAC CCACTCGTTT GTGCGGCATA CAACGCCGAC TTCGACGGTG ACCAAATGGC GGTACACGTA CCGTTAACAC TGGAAGCGCA GCTTGAAGCT CGTGCTCTGA TGATGTCTAC CAACAACATT CTGTCACCAG CGAACGGCGA GCCTGTAATC ACTCCGTCTC AAGACGTGGT ATTAGGTCTG TACTACACCA GCCGTGAGCG TATCAATGGC CGTGGTGAAG GTATGTACTT TATGTCTGTT GCTGAAGTTG AAAAAGCTTA CGCAACGGGC GCTGCTGAAC TGCATGCCCG CGTGAAAGTG CGCATCACTG AAACCATCAT TGATGAAAAC GGTGAGCGCA GCGAACAACG CCGTATCGTA GATACTACGG TTGGTCGTGC TCTGCTGTCA CAAATTCTGC CAGCAGGTTT GTCATTTGAT CTGGTTAACC AGAACATGGG CAAAAAGCAG ATTTCTAAAC TATTGAACAC TTGTTACCGT CAATTAGGTC TGAAAGATAC GGTTATCTTC GCTGACCAAC TGATGTACAC CGGTTTCCGT TACGCAACTA TCTCTGGTGC CTCTGTCGGT ATCGACGACA TGGTGATCCC AGCTGAGAAG TACACCTTAG TGGCTGACGC TGAAGCAGAA GTGCTCGAAA TTCAAGAGCA GTTCCAATCA GGTCTGGTAA CCGCGGGTGA GCGTTACAAC AAAGTAATCG ACATCTGGGC AAGTGCGAAC GAAAAAGTTT CTAAGGCGAT GATGGAAAAC CTGTCAACTG AGACAGTGAT TAACCGTGAT GGCGTTGAAG AAAAACAAGC TTCGTTCAAC AGCATTTACA TGATGGCCGA CTCGGGCGCT CGTGGTAGTG CCGCACAGAT CCGTCAGTTA GCGGGTATGC GTGGTCTGAT GGCGAAGCCA GACGGTTCGA TCATCGAAAC CCCAATCGTA GCGAACTTCC GTGAAGGTCT GAACGTTCTT CAGTACTTCA TTTCAACCCA CGGTGCGCGT AAAGGTCTAG CCGATACCGC ATTGAAGACA GCGAACTCGG GTTACCTGAC TCGTCGTCTG GTTGACGTTG CTCAAGACTT AGTGGTCATC GAAGACGATT GTGGTACTCA CGAAGGTCTG ACAATGAAGC CGCTGATCGA AGGTGGTGAC GTGGTTGAGC CATTACGTGA ACGCGTACTG GGTCGTGTGG TTGCAGTTGA TGTGTTCTAT CCAGGCACCG AAGACGTTCT TGCTCCACGT AACACGCTGC TCGATGAGGC ATGGTGTGAC AAGTTAGAAG AGCATTCAAT CGATGAAGTG ATTGTTCGTT CAGTCATTAC CTGTGATACC GATTTTGGTG TGTGTGCTGC TTGTTACGGT CGTGACTTGG CCCGTGGTCA TATCATCAAC CACGGTGAAG CGATCGGTGT TGTGGCTGCA CAATCAATCG GTGAACCTGG TACACAGTTA ACGATGCGTA CGTTCCACAT CGGTGGTGCG GCGTCACGTG CGTCTGCAGA AAACAACGTT CAAGTGAAGA ACTCTGGTTC GTTGAAACTG CACAACGCTA AGTACGTAAC AAACACTGAC GGCAAGCTGG TTATCGTTTC TCGTTCTTCT GAACTGGCAA TCATCGACGA GTTAGGTCGT GAGAAAGAGC GTTATAAAGT GCCTTACGGG ACTGTGCTCG AGAAGTTAGA AGAAGCATCA GTAGAAGCGG GCGATATTAT CGCTAACTGG GATCCACATA CTCACCCAAT CATTACTGAA GTGGCGGGTA GCATTAAGTT CGTTGATATG ATCGACGGTG TGACCATGAC TCGTCAAACA GACGAATTGA CTGGTCTGTC ATCAATCGTA ATCCTCGACG TAGGTCAACG TGGTTCTGCG GGTAAAGAAA TGCGCCCAAT GATCCGTCTG GTTGGCGCCG ACGGCAGCGA CCTGATGATC CCAGGTACTG AAGTGCCTGC ACAATACTTC TTACCAGGCA GTGCGATCGT TAACCTTGAC GACAACGCGC AAATCGCCGT GGGTGACGCG TTAGCACGTA TTCCACAGGA ATCGTCTAAA ACACGCGACA TCACGGGTGG TCTGCCACGC GTTGCCGACT TGTTCGAAGC CCGTAAGCCA AAAGAGCCAG CAATTCTGGC GGAAATCTCT GGTACCATCT CATTTGGTAA AGAGACCAAA GGCAAGCGTC GTTTGGTGAT CACACCAGCG GATGGCGGCG AACAGTATGA AGAGATGATC CCGAAATGGC GTAACTTAAA CGTGTTCGAA GGTGAAAAAG TCGAACGTGG CGAAGTTATT GCTGACGGTC CAGAAGCGGC GCATGACATT CTGCGTCTAC GTGGCATCCA CAACGTAGCA AACTACATTG TGAACGAAGT GCAAGACGTT TACCGTCTAC AAGGCGTGAA GATCAACGAT AAACATATCG AAGTGATTAT CCGTCAAATG CTGCGTAAGT GCGTGATCAC TGCTGCTGGT GACAGTGAGT TCTTAGAAGG CGAACAAGTC GAAGTGTCTC GCGTTAAGAT CGCTAACCGC GAACTTGTCG AACAAGGTAA AGTGCCTGCG ACCTTTGAAC GTGAACTGCT CGGTATTACC AAAGCGTCTC TGGCAACAGA ATCGTTTATC TCTGCAGCGT CGTTCCAAGA AACAACTCGC GTACTGACAG AAGCTGCTGT AGGTGGTAAG TCAGATAACT TACGTGGTCT AAAAGAGAAC GTTATCGTTG GCCGTCTGAT CCCAGCCGGT ACAGGTTACG CTTATCACAA GACCCGTAAC GATGCCCGTG CTAAGAAAGA CGAGCCAGTT GTAGTGAATA AGATCACTGC AAGCGAAGCT GAACAAAACC TTGCAGACCT CTTAAACCTG GCTGGTAGCC AAGATTAA
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Protein sequence | MKDLLKFLKQ QSKTEEFNGI KIGLASPDLI RSWSFGEVKK PETINYRTFK PEREGLFCAR IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP VAHIWFLKSL PSRIGLMLDM TLRDIERVLY FESFVVIEPG MTSLERGQML TEETYLDALE EYGDEFEAKM GAEAVLELLR AIDLEKEIEQ MREELPSINS ETRRKKVTKR LKLMEAFHTS GNKPEWMILK VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKM VEREVAEVWD VLDEVIREHP VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA RALMMSTNNI LSPANGEPVI TPSQDVVLGL YYTSRERING RGEGMYFMSV AEVEKAYATG AAELHARVKV RITETIIDEN GERSEQRRIV DTTVGRALLS QILPAGLSFD LVNQNMGKKQ ISKLLNTCYR QLGLKDTVIF ADQLMYTGFR YATISGASVG IDDMVIPAEK YTLVADAEAE VLEIQEQFQS GLVTAGERYN KVIDIWASAN EKVSKAMMEN LSTETVINRD GVEEKQASFN SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIV ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL VDVAQDLVVI EDDCGTHEGL TMKPLIEGGD VVEPLRERVL GRVVAVDVFY PGTEDVLAPR NTLLDEAWCD KLEEHSIDEV IVRSVITCDT DFGVCAACYG RDLARGHIIN HGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV QVKNSGSLKL HNAKYVTNTD GKLVIVSRSS ELAIIDELGR EKERYKVPYG TVLEKLEEAS VEAGDIIANW DPHTHPIITE VAGSIKFVDM IDGVTMTRQT DELTGLSSIV ILDVGQRGSA GKEMRPMIRL VGADGSDLMI PGTEVPAQYF LPGSAIVNLD DNAQIAVGDA LARIPQESSK TRDITGGLPR VADLFEARKP KEPAILAEIS GTISFGKETK GKRRLVITPA DGGEQYEEMI PKWRNLNVFE GEKVERGEVI ADGPEAAHDI LRLRGIHNVA NYIVNEVQDV YRLQGVKIND KHIEVIIRQM LRKCVITAAG DSEFLEGEQV EVSRVKIANR ELVEQGKVPA TFERELLGIT KASLATESFI SAASFQETTR VLTEAAVGGK SDNLRGLKEN VIVGRLIPAG TGYAYHKTRN DARAKKDEPV VVNKITASEA EQNLADLLNL AGSQD
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