Gene SO_0214 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_0214 
SymbolbirA 
ID1168097 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp224657 
End bp225616 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content44% 
IMG OID637342217 
Productbiotin--protein ligase 
Protein accessionNP_715854 
Protein GI24371812 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0340] Biotin-(acetyl-CoA carboxylase) ligase 
TIGRFAM ID[TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region
[TIGR00122] BirA biotin operon repressor domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGACA ACTGGGTAAG AAAACGCCAA ATATTGGGAT TGTTGTCGAA TGAGCATTTT 
GTCTCGGGTG AAGAGTTGGC TACACAACTC GGAATTTCCC GCGCAGCAGT CAGTAAGCAT 
GTAGATACGC TAGAAGACTA TGGTGTTGCC ATTTTCAGCG TGAAAGGCCG TGGTTATAAG 
TTAGCTAACC CTATCTCACT TATTGATTCA TCTCGTTTAA TTCAGGCGAT CGATAACCGC 
TGCTTTTACT TTGATGAAAT TCCTAGCACG AACGGCTTTA TGTTAGGCCA TACAAGTGAG 
CTTAAGAGTG GTGATCTATG TGTCGCTGAG TATCAGTCTG CAGGGCGAGG ACGTAGAGGA 
CGGACTTGGG TGTCTCCCTA TGGGCATCAT TTGTACTTCT CGCAGTTTTG GTCATTTCCA 
CAGGGAATGG CGCAGGCTAT GGGTTTAAGC TTAGTCGTGG CTTGTAGTCT AGTTGAGGTA 
CTGAAATCCT TCGGTGTTGA AAATGTTGGT GTTAAGTGGC CGAACGATAT TTATCTTAAT 
TTCAAGAAAC TTGCTGGCAT TTTGATTGAA ATGTCTGGGC AGGCAGATAG TGAGTGCCAA 
TTGATTATTG GTATTGGCGT AAATATGGCA ATGTCAGAAG GCCAAGGTAA AGGGATTGAT 
CAGCCTTGGA GCGACTTATC TGGTTTGACG TGTATACCAA ATAAAACGGA CCTGGTGATT 
GCATTACACA AACAGTTGAA AAGGGATATA CAGTTGTTTG AGCGTGAAGG GCTGGTAGCC 
TTTAAAACGC GGTGGCAGGA GGCAGATCTG TTCCATGGTA AAGAAATTCG TTTATTGATG 
GGCGAGAATC ACCTTGACGG TATTTGTCGT GGGATTGATG AACAGGGCGC TGTATTGTTA 
GAAAACGCCG ATGGCATACA AGCCTATATC GGCGGAGAAA TCAGTTTAAG GCCAATATAA
 
Protein sequence
MSDNWVRKRQ ILGLLSNEHF VSGEELATQL GISRAAVSKH VDTLEDYGVA IFSVKGRGYK 
LANPISLIDS SRLIQAIDNR CFYFDEIPST NGFMLGHTSE LKSGDLCVAE YQSAGRGRRG 
RTWVSPYGHH LYFSQFWSFP QGMAQAMGLS LVVACSLVEV LKSFGVENVG VKWPNDIYLN 
FKKLAGILIE MSGQADSECQ LIIGIGVNMA MSEGQGKGID QPWSDLSGLT CIPNKTDLVI 
ALHKQLKRDI QLFEREGLVA FKTRWQEADL FHGKEIRLLM GENHLDGICR GIDEQGAVLL 
ENADGIQAYI GGEISLRPI